Kryptolebias marmoratus (mangrove rivulus): 108248231
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Entry
108248231 CDS
T05608
Symbol
col1a1b
Name
(RefSeq) collagen, type I, alpha 1b
KO
K06236
collagen type I alpha
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr04510
Focal adhesion
kmr04512
ECM-receptor interaction
kmr04518
Integrin signaling
kmr04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108248231 (col1a1b)
04518 Integrin signaling
108248231 (col1a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
108248231 (col1a1b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
108248231 (col1a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
kmr00536
]
108248231 (col1a1b)
Glycosaminoglycan binding proteins [BR:
kmr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108248231 (col1a1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
TILa
Motif
Other DBs
NCBI-GeneID:
108248231
NCBI-ProteinID:
XP_017292349
LinkDB
All DBs
Position
LG17:complement(23046535..23065080)
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AA seq
1452 aa
AA seq
DB search
MFSFVDIRLALLLCATVLLAKGQGEDDSQFESCTLDGQLYNDKDVWKPEPCQICICDKGS
VLCDEVICEETFDCEDPYIPDGECCPVCGDPTDYTDPTEPTESGIPKGPPGPTGEPGYPG
LPGNDGIPGQPGIPGPPGPPGPPGIGGNFSPQMSYSDPSKSSGPPVPGPMGPMGPRGPPG
PPGYSGPQGIPGPAGEPGEPGANGPMGPRGPVGPPGKNGDDGEPGKAGRPGERGAAGPQG
ARGFPGTPGLPGIKGHRGFSGLDGAKGDSGPAGPKGEPGNPGENGIPGAMGARGLPGERG
RPGPPGPSGARGNDGNTGPAGPPGPTGAAGPPGFPGGAGAKGETGPAGGRGSEGPQGSRG
EPGNPGPAGPAGSAGTPGTDGQPGAKGSPGAAGIAGAPGFPGPRGPSGAQGAVGAPGPKG
NNGDHGPTGPKGEPGAKGEPGPAGVQGLPGPAGDEGKRGPRGEPGGAGPRGPPGERGGPG
ARGFPGGDGGAGGKGAPGERGAPGPLGPQGATGESGSPGAPGAPGSKGMTGSPGSPGPDG
KVGPAGAPGQDGRPGPAGPAGSRGQPGVMGFPGPKGAAGASGKPGERGPGGATGSVGAPG
KDGDAGAPGPSGPAGPAGEKGEQGPSGAPGFQGLPGPQGSTGETGKPGEQGAPGEAGPPG
PSGPRGDRGHPGERGANGAAGPTGPRGAPGPSGNDGPKGEPGAGGAPGGVGPAGMQGMPG
ERGAGGMPGVKGERGEGGTKGADGAAGKDGVRGLTGAIGLPGPPGAQGEKGESGPAGVVG
PSGSRGAPGERGETGPAGTAGFAGPPGADGQPGAKGENGDTGPKGDAGAPGPAGPVGGSG
PQGPAGPSGPKGARGGPGSPGATGFPGPAGRVGPPGPPGAAGPPGPVGPVGKDGARGGRG
ETGPAGRPGEAGAGGPPGPGGEKGSAGSDGAPGAPGLPGPQGIAGQRGIVGLPGQRGERG
FSGMPGPSGEPGKQGPSGPVGERGPPGPAGPPGLSGAPGEAGREGSQGHDGAPGRDGSSG
PKGDRGESGMAGPPGPPGAPGAPGSVGPSGKSGDRGESGPAGPAGPTGIAGPRGSVGPAG
GKGDRGEAGEAGDRGHKGHRGLSGQPGMPGPSGPPGERGPAGASGPAGPRGPSGNNGASG
KDGQNGMPGPIGPPGPRGRNGEMGPAGPPGPPGLPGPPGAPGSGFDFIGQPSQEKAPDPL
RGGYRADDPNMMRDRDMEVDTTLKTLTQKVEKIRSPDGSQKSPARMCRDLRMCHPEWKSG
MYWVDPNQGSSLDAIKVHCNMETGETCVYPSETSIPMKNWYLSKNIREKKHVWFSESMTG
GFQFQYGSNEADPEDVNIQISFMRLMSNQASQNITYHCKNSIAYMDSATGNLKKSMLLQG
SNDVEIRAEGNSRFTYSVSEDGCTSHTGTWGKTVIDYKTTKTTRLPIIDIAPMDVGAPDQ
EFGVEVGPVCFL
NT seq
4359 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggatattcggttagcgcttttgctctgcgcaacggtgcttctggca
aaaggtcaaggcgaggatgatagccaatttgaaagctgcacattagacggccaactgtac
aacgacaaggatgtgtggaaaccagaaccctgccagatctgcatttgcgacaaggggagc
gtcctgtgcgacgaggtgatctgtgaggaaacgttcgactgtgaagatccttacatccct
gatggagagtgctgccctgtctgcggcgaccccactgactacacggacccaactgaacca
acagagtcagggatcccaaaaggaccccctggccctacaggagaaccgggttatcctggt
cttcctggcaatgatggaatccccggacagcctggtatccccggcccacccggcccccct
ggccccccaggcattggcggaaacttctctcctcaaatgagctactccgacccctcaaag
tccagcggccccccagtccccggcccaatgggtcctatgggtccccgtggtccccctgga
cctccaggctactctggtcctcagggtattcctggaccagctggagagcctggtgagcct
ggagctaatggtcctatgggtcctcgtggtcccgttggtcctcctggaaagaatggagat
gatggtgagcccggcaaagctggacgccccggtgagcgtggagctgccggccctcagggc
gctcgtggattccctggaactccaggactccccggcatcaagggacacagaggtttcagc
ggtctggatggagccaagggagacagtggacctgctggtcccaagggagagcctggtaac
cctggtgagaacggcatccctggtgccatgggagctcggggtcttcctggtgagagaggc
cgccctggacctcctggaccttctggcgctcgtggtaacgatggtaacaccggtcctgct
ggtcctcctggccctaccggagctgccggtccccctggattccccggcggtgctggtgct
aagggtgagaccggtcctgcaggaggccgtggatcagagggaccccagggatcccgtggt
gagcctggtaaccctggacctgctggccccgctggatctgctggtactcctggaactgat
ggtcagcctggtgccaagggctctcctggtgctgctggtattgctggtgctcctggtttc
cctggtcctcgtggtcctagtggagctcagggagctgttggtgctcctggtcccaagggt
aacaatggtgatcatggacctactggtcctaagggagagcccggtgccaagggtgagcct
ggccccgctggagttcaaggacttcccggccccgctggagatgagggaaagagaggacct
cgtggagagcctggtggtgctggaccccgcggaccccctggagagcgtggtggccctggt
gctcgtggtttccctggaggtgatggaggtgctggtggaaagggtgcccctggcgagcgt
ggtgcccccggcccactaggacctcaaggagccaccggtgagtctggaagccctggtgct
cctggcgctcccggatccaagggtatgaccggcagccctggaagccctggccctgacggc
aaagttggacctgctggtgctcctggacaagatggccgccccggacctgctggccctgcc
ggatccagaggacagcccggtgttatgggattcccaggacccaagggagctgctggtgca
agtggtaagcccggtgagagaggccctggtggtgctactggctctgttggtgcccctggc
aaagacggtgatgctggtgctcctggaccttctggtcctgctggtcctgctggagagaag
ggagaacagggaccttctggtgctcctggattccagggacttcctggaccccaaggttct
actggtgagactggcaagcctggtgagcagggtgctccaggtgaggctggacctcctggc
ccatctggacccagaggtgatagaggccaccccggtgagcgcggtgcaaatggtgctgct
ggtccaactggacctcgtggtgctcctggaccttctggtaacgatggacctaagggagag
cccggtgccggtggcgcccccggtggtgtgggacccgctggtatgcagggaatgcctggt
gagcgaggagctggcggcatgcctggcgtcaagggcgaaagaggagagggtggtacaaag
ggagctgatggcgccgctggcaaagatggtgttcgtggtttgactggtgctatcggactc
cctggacctcctggtgctcagggtgagaagggtgagtctggtcctgctggagtcgttgga
ccctctggttctcgtggtgcccctggcgagcgtggagagaccggacctgctggaactgct
ggatttgccggacctcctggtgctgatggtcagcctggtgccaagggagaaaatggtgac
actggacccaagggagacgctggtgctcctggacctgctggccctgttggaggttctggt
cctcagggacctgctggcccatctggacccaaaggtgctcgtggtggtcctggatcccct
ggtgctactggtttccccggacccgccggcagagttggaccccctggcccccctggagct
gctggaccccctggacccgtcggacctgttggaaaggacggagcaagaggaggtcgtggt
gagactggccctgctggtcgccctggtgaggctggtgctggtggacccccaggacccggt
ggagagaagggttctgctggctctgatggagctcctggtgcccctggtctccctggacca
caaggtattgctggacagcgtggtattgtaggtctccctggacagcgtggagagcgtggt
ttctctggcatgcccggaccaagtggtgagcctggaaagcagggaccttctggccccgtt
ggtgagcgtggacctcccggacctgctggaccccctggtctgtctggtgctcctggagag
gctggccgtgagggatcccaaggtcatgatggtgcccctggccgtgatggatcttctgga
cccaaaggagaccgcggtgagagtggtatggctggaccccctggacctcctggcgctcct
ggagctcctggatctgttggaccctctggcaagtctggcgatcgtggagagagtggtcct
gctggccctgctggtcccactggcatcgctggaccccgtggttctgtgggccctgctgga
ggtaagggagacagaggagaggccggtgaggctggagacagaggacacaagggacacaga
ggactcagtggccaacccggaatgcctggaccttctggacctcctggagagagaggaccc
gctggtgcctccggacctgctggacccagaggaccttctggaaacaatggcgcctctggt
aaggatggtcagaacggcatgcctggaccaattggaccccctggacctcgtggtcgcaat
ggagagatgggacctgctggtcccccaggacctcctggactccccggacctcctggagct
cccggcagtggattcgacttcatcggccagcccagtcaggagaaggctcccgatcccctc
cgtggtggttaccgcgccgacgaccccaacatgatgcgagatcgcgacatggaggtggac
accactctaaagaccctgacccagaaggttgagaagatccgcagccctgatggttcccag
aagagccctgctcgcatgtgccgcgacctgaggatgtgccatcctgagtggaagagcggc
atgtactgggttgaccccaaccagggctcttctctggacgccatcaaggtccactgcaac
atggagactggtgagacttgtgtctacccctctgagaccagcatccccatgaagaactgg
tacctcagcaagaacatcagagagaagaagcatgtctggttcagcgagtccatgactggt
ggattccagttccagtatggcagcaacgaggctgatcccgaggacgtcaacatccagatc
tccttcatgcgcctgatgtccaaccaggcttcacagaacatcacatatcactgcaagaac
agcattgcctacatggattctgccaccggcaacctgaagaagtctatgctcctccagggc
tccaacgacgtcgagatcagagctgagggcaacagccgcttcacatacagcgtcagcgag
gatggctgcacgtcacacactggcacatggggcaagacagtcatcgactataagacaacg
aaaacaacccgactgcccatcattgacattgctcctatggatgttggtgcacctgatcag
gaatttggcgtcgaagttggccctgtttgcttcttgtaa
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integrated database retrieval system
