Kryptolebias marmoratus (mangrove rivulus): 108249524
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Entry
108249524 CDS
T05608
Symbol
polr2a
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr03020
RNA polymerase
kmr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
108249524 (polr2a)
09124 Replication and repair
03420 Nucleotide excision repair
108249524 (polr2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kmr03021
]
108249524 (polr2a)
03400 DNA repair and recombination proteins [BR:
kmr03400
]
108249524 (polr2a)
Enzymes [BR:
kmr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
108249524 (polr2a)
Transcription machinery [BR:
kmr03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
108249524 (polr2a)
DNA repair and recombination proteins [BR:
kmr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
108249524 (polr2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
108249524
NCBI-ProteinID:
XP_024857963
LinkDB
All DBs
Position
LG7:complement(10585215..10596632)
Genome browser
AA seq
1726 aa
AA seq
DB search
MHGPPSGDSACPLRMIKRVQFGVISPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQ
GVIERSGRCQTCAGNMTECPGHFGHIELAKPVFHVGFITKIMKILRCVCFFCSKLLVDSN
NPKIKEILTKSKGQPRKRLTHVYELCKGKNICEGGEEMDNKFGMEPQENEEDLTKEKGHG
GCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEDIILGMDPKF
ARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAHV
IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDFS
ARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD
NGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTF
RLNLSVTTPYNADFDGDEMNLHLPQSLETKAEIQELAMVPRMIVTPQSNRPVMGIVQDTL
TAVRKFTKRDVFLERGEVMNLLMFLSTWDGKMPQPAILKPRPLWTGKQVFSLIIPGHINV
IRTHSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGH
DITRLFYSNIQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHN
NELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINIS
QVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMG
GREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGENVE
FQNVATLKPSHKAFEKKFKFDCTNERALRRILQEDVVKDVQTNAHVQSVLEREFEKMKED
REILRAIFPTGDSKVVLPCNLARMIWNAQKIFRINPRTPTDLNPLRVVEGVQDLSKKLII
VNGDDPLSRQAQENATLLFNIHLRSTLCSKRMTEEFRLSTEAFDWLLGEIETKFSQSIAH
PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVF
LLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVAEDQEWVNVYYEMPDF
DVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM
NSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII
TDDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL
YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEA
SSHGECDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGMF
FGSVPSPMSGMSPAMTPWNTGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGCY
SPAWASTPGSPGSPGPASPYIPSPGGAMSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPS
YSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT
SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPAISPDDSDEENN
NT seq
5181 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaccgccctccggcgacagcgcatgcccattgcgcatgatcaagagagttcag
ttcggcgtcatcagcccagatgaacttaaacggatgtcggtgactgaggggggcattaag
taccccgagaccacagagggaggacgaccgaagctcggcggcctcatggatccgaggcaa
ggcgtgatcgaacgcagcgggaggtgtcaaacgtgtgcaggcaatatgacggagtgcccg
ggtcactttgggcacatagagctggcgaaaccggttttccacgtcggcttcatcacaaag
atcatgaagatcctccggtgcgtgtgcttcttctgctccaagctgttggtggactcgaac
aaccccaagatcaaagagatcctgacgaagtcgaaagggcagcccaggaagcgcttgacc
cacgtgtacgagctgtgcaaaggcaagaacatttgcgaaggcggcgaggaaatggacaac
aagttcggaatggagccgcaggagaacgaggaggatctcaccaaggagaagggccacggc
ggctgcgggcgctaccagccgcgcatcaggcgctcgggtctggagctctacgccgagtgg
aagcacgtcaacgaggactcccaggagaagaaaatcctgctgagccccgagcgcgtgcac
gagatcttcaagcgcatctcggacgaggaggacatcatcctgggcatggaccccaagttc
gcccggccggagtggatgatcgtcaccgtgctgcccgtgccgccgctggctgtgaggccc
gccgtggtcatgcaaggatccgctcgcaaccaggacgacttgacgcacaagttggcggac
atcgtgaagatcaacaaccagctgagaaggaacgagcagagcggcgccgctgcccacgtg
atcgccgaggacgtgaagctgcttcagtttcacgtggccaccatggtggacaacgagctg
ccgggcctgccgagggcaatgcaaaagtctggccgccccctcaaatccataaagcagcgt
ctaaaagggaaggaggggcgggtgaggggtaacctgatgggcaagcgcgtggacttctca
gcccgaacggtcatcacaccggaccccaacctgcagatcgaccaagtgggcgtgccgcgc
tccatcgcggccaacatgaccttcccggagatcgtcacgccctttaatatcgacagattg
caggagctggttcgaagaggaaacagccaatatcctggcgccaaatacatcatccgcgac
aacggagaccggatcgacctgcggttccacccgaaaccaagtgaccttcacctgcagatc
ggctacaaggtggaacgacacatgtgcgacggcgacatcgtcatcttcaaccggcagccc
acgctacataaaatgtccatgatgggccacagggtccggatcctgccgtggtccacgttc
cgactcaacctcagcgtcaccaccccgtacaatgccgacttcgacggcgacgagatgaac
ctccacctgcctcagtctctggagacgaaggcggagatccaggagctggccatggtgccg
cgtatgattgtcacgccccagtccaacaggcccgtcatgggcatcgtgcaggacaccctc
acggccgttcgcaagttcaccaaaagggacgtcttcttagagaggggtgaggtgatgaac
ctcctcatgttcctctccacttgggacggcaagatgccccagcccgccatcctcaagccg
cgcccgctgtggacgggcaagcaggtcttcagcctcatcattcccggccacatcaacgtg
atccgcacgcacagcacgcaccccgacgacgaggacagcgggccctacaagcacatctcc
cccggcgacaccaaggtgatcgtggagaacggggagctgatcatgggcatcctgtgcaag
aagtccctggggacgtcggcgggctccctggtccacatctcgtacctggagatgggtcac
gacatcacccggctcttctactccaacattcagaccgtggtcaacaactggctgctcatc
gagggtcattcgatcggtattggtgactccatcgccgacgccaagacgtacctggacatc
cagaataccatcaagaaagccaaacaggatgtgatagaagtcatcgagaaagctcacaac
aacgagctggagccgacgcccggcaacacgctgaggcagaccttcgagaaccaggtgaac
cgcatcctcaacgacgcccgcgacaagacgggctcgtccgcccagaagtctctgtccgag
tacaacaacttcaagtccatggtggtggctggctccaagggctcgaagatcaacatttcc
caggtcatcgctgtggtggggcagcagaacgtggagggcaagcggatcccgttcggcttc
aagcaccggactctgcctcacttcatcaaggacgactacggtcccgagagccgaggcttt
gtggagaactcctacctggccgggctgacgccgaccgagttcttcttccacgccatggga
ggccgagagggtctgatcgatacggccgtcaagacggccgagacggggtacatccagcgt
cgtctgatcaagtctatggagtctgtgatggtgaagtacgacgccacggtgcggaactcc
atcaaccaggtggtgcagctgcgctacggcgaggacggtctggcgggggagaacgtcgag
ttccaaaacgtggcgacgctcaaaccatcgcacaaggccttcgaaaagaagttcaagttc
gactgcaccaacgagcgcgcgctgcggcggattctgcaggaggacgtggtgaaggacgtg
cagaccaacgcgcacgtgcagagcgtcctggagagggagttcgagaagatgaaggaggac
cgggagatcctgcgagccattttccccacgggcgacagcaaggtggtgctgccgtgcaac
ctggccaggatgatctggaacgctcagaagattttccggatcaaccctcgaacgccgaca
gacctgaatcctctcagagtggtcgagggcgtccaggacctgagcaagaagctgatcatc
gtgaacggtgacgaccccctgagcaggcaggcccaggagaacgccacgctgctcttcaac
atccacctgcgctccacgctctgctccaagcgcatgacggaggagttccgcctgtccaca
gaggccttcgactggctgctgggcgagatcgagaccaagttcagccagtccatcgctcac
ccgggcgaaatggtcggcgccctggctgctcagtcgctgggcgagccggccacgcagatg
accctgaacaccttccactacgccggcgtgtcggccaagaacgtgactctgggcgtgccc
cgtctgaaggagctgatcaacatctccaagaggcccaagacgccctcgctgaccgtcttc
ctgttgggtcaggcggcacgcgacgccgagagggccaaggacatcctgtgtcgactggag
cacaccacgctgcgcaaagtgaccgccaacaccgccatctactacgacccgaaccctcag
aacacggtggtggccgaggaccaggagtgggtgaacgtctactacgagatgcccgacttc
gacgtgacgcgcatctcgccgtggctgctgcgcatcgagctggaccgcaagcacatgacg
gaccgcaagctgaccatggagcagatcgccgagaagatcaacgcaggtttcggagacgac
ctgaattgcatcttcaacgacgacaacgccgagaagctcgtgctgcgaatccggatcatg
aacagcgacgagaacaagttccaagaggatgaggaggtggtggacaaaatggacgacgac
gttttcttgaggtgcatcgagtccaacatgctgacggacatgacgctgcagggcatcgag
cagatcagcaaggtgtacatgcacttacctcagaccgacaacaagaagaagatcatcatc
acggacgacggcgagttcaaggccctgcaggagtggatcctggagacggacggcgtcagc
ctcatgagggtcctcagcgagaaggacgtggatcccgtcaggaccacctccaacgacatc
gtggagatcttcacggtgctggggatcgaagcggtgaggaaggcgctggagagggagctg
taccacgtcatctccttcgacggctcctatgtcaactaccgccacctggctctgctgtgc
gacaccatgacctgccgcggccacctgatggccatcacgcgccatggcatcaaccgccag
gacacgggccccctcatgaagtgctccttcgaggagacggtggacgtgctgatggaggcg
tcgtcccacggagagtgcgacccgatgaagggcgtgtcggagaacattatgctcggccag
ctcgcccccgccggaacgggctgcttcgacctgctgctggacgccgagaagtgcaaatac
ggcatggagattccgacaaacatccctggcatcagtgtggccggacccaccgggatgttc
ttcggctcggtgccgagccccatgagcggcatgtcccccgccatgacgccatggaatacg
ggggccacccccgcctacggtgcctggtcccccagcgtcggaagtggcatgacccccgga
gcagcgggcttctctcccagcgcggcgtcggacgcaagcggcttctctcccggttgttac
tcgccggcctgggcttccacacccgggtccccggggtccccgggtcctgccagtccttac
atcccctccccaggtggagccatgtcacccaactactcccccacctcccccgcctacgag
ccccgctcaccgggcggctacactccccagagcccgggctactcccccacctctccctcc
tactctcccacctccccctcttactcccccacctcgccttcctactcccccaccagcccc
aactacagccccacatccccgtcgtactcccccacgtcgcccagctactcgccgacgtcc
ccctcctactcgcccacgtctccctcctactcgccaacgtccccctcctactcgcccacc
tccccctcgtactcgcccacgtcgccgtcttactcccccacctcgccgagctacagcccg
acgtcgccctcctactcccccacctcccccacctacagcccggccatcagcccagacgac
agcgacgaggagaacaactga
DBGET
integrated database retrieval system
