Kryptolebias marmoratus (mangrove rivulus): 108249770
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Entry
108249770 CDS
T05608
Symbol
cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X3
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108249770 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kmr03019
]
108249770 (cnot1)
Messenger RNA biogenesis [BR:
kmr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108249770 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
108249770 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
108249770
NCBI-ProteinID:
XP_017294839
LinkDB
All DBs
Position
LG11:complement(27803850..27836215)
Genome browser
AA seq
2398 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLISKPNFISTLCYAIDSPLHYQKSLKPSAHLFTQLSKVLK
LSKVQEVIFGLALLNSSNTDLRGFAAQFIKQKLPDLLRSYVDADLGGTQEGGFQDIAIEV
LHLLLSHLLFGQKGASGVGQDQIDAFLKTLCRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGELAKTIMESSLADFIQEVGYGFCASLDECRNIILQYGVREVTASQVARVLGMMART
HSGLSDGIPLQSISAPGSGIWSDGKDKNDGSQAHTWNVEVLIDVVKEVNPNLNFKEVTYE
LDHPGFIIRDSKGLHIVVYSIQRGLGLEVFPVDLIYRPWKHAEGQFSFIQHSLMNPDVFC
FADYPCHTVAIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGQYEQVKQLFSFPIKHC
PDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
SMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACVTFLKRRCPSIMGGLAPDKDQPKSAQLPPETLTTMLTCLKSCAG
SVSQDLSETILTMAANCNNVMNKARQPPPGVMPKGRAPSTSSLDAISPVQMDHLTGMSSL
SLGGTATSHTQSMQSFQTSLSSALSNPLSPAKAFPPLPNSNPSTPFGGINISSQLPGMDS
GPLGSAIGSNSGFSLGMPTVSADPFGTRKISTPGLNPPTFQQTDLSQVWPEANQHFSKEI
DDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEYRFFPQ
YPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPYGSKMYYFGIAALDRFKNR
LKDYPQYCQHLASIAHFLQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSLALAQVQAQA
QSQQPASLKAPQPGQPSTLVTTTTTTTTAAKTSTITRPTPSTFKKDMPPSINTTNIDTLL
VATDQTERIVEPPETVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRV
SIEPNFHSLYSNFLDTLKNPEFVKMVLSETYRNIKVLLTSDKAAANFSDRSLLKNLGHWL
GMITLAKNKPILYTDLELKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSMVFRPQNPWT
MAIMNVLAELHQEHDLKLNLKFEIEVLCKNLSLDINDLKPGNLLKDKEKLKNLEEQLSAP
KKETKPPEEMLPVSTTGDFVPFAAPTSTPAATTTTCTTTGPPTPQFSYHDINVYSLAGLA
PHININVNIPLLQAHPQLKQCVRQSVERAVQELVHPVVDRSIKIAMTTCEQIIRKDFALD
SEESRMRVAAHHMMRNLTAGMAMITCREPLLMSIATNLKNSFAAALRAPTPQQREMMEEA
AARIAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAE
RMPEQIRLKVGGVDPKQLAVYEEFARNIPGFLPSNDLSQPTGFLAQPMKVNLSPVTIPKQ
NNQAWATDDVAQIYDKCIADLEQHLHAIPPALAMNPLTQGLRSLLEAVALARNSRDGIAA
LGLLQKAVEGLLDATSGADADLLLRYRECHLLVLKALQDGRAYGPQWCNKQITRCLIECR
DEYKYNVEAVELLIRNHLVNMQQYDVHLAQSMENGLHYMAVAFAMQLVKLLLVDERSVSH
VTEADLFQTIETLMRTCAHSRANAPEGLPQLMDVVRSNYEAMIDRAHGGPNFMMHSGISQ
ASEYDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRF
FRLCTEMCVEISYRAQAEQQHNPAASAAIIRAKCYHNLDAFVRLIALLVKHSGEATNTVT
KINLLNKVLGIVVGVLIQDHDVRQTDFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTA
FCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPF
LRNVELIKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPR
NMRLPDPFTPNLKVDMLSEINIAPRILTNFTGVMPSQFKKDLDSYLKTRSPVTFLSELRS
NLQVSNEPGNRYNIQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDL
DTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPH
PWGLLITFIELIKNPAFKFWSHDFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7197 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggctttgtctcaaatcagctatctcgtggacaattta
acaaagaaaaactaccgagccagccaacaagaaatacagcatattgtaaatcgtcacggt
cctgaggcagacaggcatcttcttcgctgtctcttttcccatgtggattttagtggcgat
ggtaaaagcagtggcaaagactttcaccagacacagtttctgatccaagagtgtgtgtcg
ctgatatcaaagccaaactttatctctactctgtgttacgccattgacagccccctgcac
taccagaagagtttgaagccatctgctcaccttttcactcaactgagtaaagtccttaaa
ctcagcaaggtccaagaggtgatatttggccttgctttacttaactccagcaacacagat
cttcgtggttttgctgcacagttcatcaagcagaagcttccagacctcctgcgttcatac
gttgacgcagatcttggtggaacccaagagggcggcttccaggacattgcaatagaggtg
ttgcacctgctgctctcccatctactgtttggacagaagggagccagtggggtagggcag
gaccagattgacgccttcctcaagacactttgccgagatttcccccaggagcgctgccct
gtggtgctcgcaccactgctgtaccctgaaaaacgggacattctcatggacaggatccta
ccagactcgggggagttagctaagaccatcatggagagttctcttgctgacttcattcaa
gaagttggctatggcttctgtgctagtctggatgaatgcagaaacataatcctccagtat
ggggtgagagaggtgacagccagtcaggtagccagggtcctgggaatgatggctcgtacc
cactctggtctgtctgatggcatcccacttcagtccatttctgctccaggaagtggtatc
tggagtgatggcaaggacaagaacgatggttcgcaggcccatacctggaatgttgaggtt
cttattgacgttgtcaaagaagtgaatcccaacttgaacttcaaagaggtgacgtatgaa
ctggaccacccaggctttataatccgggacagtaaaggcctgcatatagtggtgtacagt
atccagagagggctgggcctggaggtgttccccgtcgacctcatctatcgaccatggaaa
catgctgagggacagttttcgttcattcagcattccctgatgaacccagatgtgttctgc
tttgctgactatccttgtcacaccgtggccatcgacatccttaaagccccaccggaggat
gacaacagagagattgccacatggaaaagtctcgatcttgtggaaagccttcttagactc
tctgaagttggccagtacgagcaggtgaagcagcttttcagcttcccaatcaagcactgc
ccagacatgttggtgctggcactcctgcagatctccacctcctggcacacactgcgccat
gagctcatctctaccctaatgcctatttttctgggcaaccaccccaactctgccattatt
ctgcactatgcatggcacggacaggggcagtctccttctattcgtcagctaattatgcat
tctatggcagagtggtacatgagaggagagcagtatgatcaggctaagctgtctcgcatc
ctggatgtggcccaggacttgaagtctctctctatgctgctgaatggtactccatttgcc
tttgttattgacctcgctgcacttgcctctcgccgtgaatacctcaaacttgataaatgg
ctgacagacaaaatcagagagcatggagagccttttatccaggcttgtgtgacattcctg
aagaggcgctgcccgtctattatggggggtctggcccctgacaaggaccagcccaaaagt
gcccagttgcccccagagacgttaaccaccatgcttacctgtttgaaatcttgtgctggg
agtgtgtcccaggatttgtcagagacaatcctaaccatggctgccaactgtaataatgtc
atgaataaagctcggcagccaccaccaggagtaatgcccaaaggacgggccccaagtact
agcagcttggacgcaatctcacctgtacagatggaccatctgactggtatgagctccttg
agcctgggtggaacagctacctcccacacgcagagcatgcagagcttccagacttcactg
agttcagctctcagtaaccctctgtcccctgcaaaggccttccctccactgcctaactct
aaccccagcacaccattcgggggtattaatatcagctcgcagctccctggtatggactct
ggtccattgggctcagctatcggatctaacagtggctttagtctgggaatgccaacagta
agcgccgatccgtttggtaccaggaagataagcacaccaggcttgaacccacccaccttt
cagcagactgatctttctcaggtgtggcctgaggcaaaccagcactttagcaaggagatc
gatgatgaagcgaacagctacttccagcgaatctacaaccacccacctcacccaactatg
tctgtagatgaagtactggaaatgcttcaaaggttcaaggactcaaccatcaagcgggaa
cgagaagtattcaattgcatgcttcgaaacttatttgaggaatacagatttttccctcaa
tacccagacaaggagctgcacatcactgcctgcctctttggtggtattattgagaagggt
ctcgtgacctacatggctcttggcctggcccttcgatatgttctcgaagccttacggaaa
ccatatggatcaaaaatgtattactttggaattgctgccctagataggttcaaaaacaga
cttaaggactatcctcaatattgtcaacacctggcctcaattgctcactttttgcaattt
cctcaccatttacaagagtatattgagtatggacagcagtcccgggacccaccagtgaag
atgcagggctccatcaccacacctggaagcctggctctggcccaagttcaagcccaggcc
cagtcacagcagcctgccagcctcaaagccccacagccaggccagcccagcaccctggtc
accaccaccacaaccacaaccacagcagccaagaccagcaccatcacaagacccacaccc
agcaccttcaagaaagacatgcctccttccatcaacaccaccaacattgacactctgctg
gtggccactgatcaaacagaaaggattgtagaacctccagagactgttcaggagaagatt
gctttcatctttaataacctttctcagtccaatatgacacagaaggttgaagagttaaaa
gagactgtgaaagaggagtttatgccatgggtgtcgcagtacctggtgatgaagcgtgtc
agcattgagcccaacttccacagcctctattctaactttttggacaccctcaagaaccca
gagtttgtcaagatggttctcagtgaaacttacagaaatattaaggtacttctgacctca
gacaaggcagctgctaacttctctgatcgctccctgctgaagaacctgggccactggttg
ggcatgataacactggccaaaaacaagccaattctttatacggatctggaactgaaatct
ctgctgctggaagcttacgtgaaaggccagcaggagctgctttatgttgttccgtttgtg
gccaaagtcttggagtccagtctgcgtagcatggttttcagacctcagaatccatggacc
atggccatcatgaatgttcttgctgaattgcatcaagaacacgacctcaagctgaaccta
aagtttgagattgaagttctgtgtaagaacttatctctggacatcaatgatctgaagcca
ggaaacctgctgaaggacaaagagaagctgaagaacctggaggagcagctgtctgcacca
aagaaagaaacaaaacctccagaggagatgctaccagtttctaccacaggagactttgtt
ccatttgcagctcccacctctactccagctgcaaccaccaccacgtgcacaaccaccggg
ccgcccacgccgcagttcagttaccatgacatcaacgtgtattccctggccggcctggcg
ccacacatcaatataaatgtcaatatccctctgctgcaggctcatcctcagctgaaacaa
tgtgtgcggcagtccgtggagcgggcagtccaggagcttgtgcatcctgtggtagatcgc
tcgatcaagattgcaatgacaacctgtgaacaaatcatcaggaaggattttgccctggat
tcagaggagtcccgcatgcgtgtagcagcacatcacatgatgagaaacctgactgctggc
atggccatgatcacatgtcgtgagcctttgctcatgagcatcgccaccaatctgaagaac
agcttcgctgctgcacttagggcaccaactccccagcagagagagatgatggaagaggct
gctgccagaattgcccaagacaactgtgagttagcctgctgcttcattcagaaaactgct
gtggagaaggctggccctgaaatggacaagagactagccacggagtttgaactgaggaag
cacgctcgccaagaaggtcgtcgttactgtgatcccgttgttctgacttaccaggctgaa
cgtatgcctgaacagatcagactcaaggtgggaggagtggaccccaaacagctggctgtt
tacgaggagtttgccaggaacattccaggtttcttaccaagcaacgatctctctcaaccc
actggctttttggctcagcccatgaaggtgaatttatctcccgtgaccatcccaaaacaa
aacaaccaggcatgggccactgacgacgtggctcagatctatgataagtgcatagcagac
ttggagcagcatcttcatgccattcctccagcgcttgccatgaatcctctgacccaaggc
ctgcgtagtttactggaagctgtggctttagccaggaactccagggatgggattgctgca
cttggcctcctgcagaaggctgtggagggtcttctggatgcaacaagtggagctgatgct
gacttgctgctgcgctacagagagtgccacctgctggtgttgaaagcccttcaggacggg
cgtgcttatggaccacagtggtgcaataagcagatcaccaggtgtttgattgaatgtcgt
gacgaatacaaatacaacgtggaggcagtggagcttctgatcaggaaccatctagtaaac
atgcagcagtatgatgtgcacctggcgcagtccatggagaatgggttgcactacatggcc
gtagcgtttgccatgcagttggtgaagctgctgctggtggatgaacgcagcgtaagccac
gtcacagaagctgacctcttccaaacaattgagacattgatgagaacctgcgcacactcc
agagccaacgcaccagaggggcttccccagctgatggatgttgttcgctccaactatgag
gcaatgattgaccgggctcatggtggacccaacttcatgatgcactctgggatttcacag
gcttcagaatatgatgatcctccaggcctgagagagaaggcagagtacctgctgagggaa
tgggtcaacctgtatcactcggctgctgctggaagggacagcaccaaggctttctctgcc
ttcgttggccagatgcatcagcagggcatcttgaagaccgatgacctgatcacacggttc
ttccgactgtgcacagaaatgtgtgtggagatcagctaccgtgcacaggccgaacaacag
cacaacccagcagccagcgcagccatcatcagagccaaatgttaccacaacctggatgcc
tttgtgaggctcatagccctgctggtcaaacactctggagaggccaccaacacggtgacc
aaaataaaccttctcaacaaggtgcttggtattgtagtcggtgtcctgattcaggaccac
gatgtccgtcaaacagatttccagcagctaccataccaccgcatattcatcatgctgctg
ttggagctgaatgctcccgaacatgtccttgagaccatcaacttccagacactcactgcc
ttctgcaatacgtttcatattctgagacccaccaaagcacccggctttgtgtacgcctgg
ctggagctcatctcccatcgcatttttattgccaggatgctggcacacacaccgcagcag
aagggttggcccatgtatgcacagctgctgattgatctctttaagtacctcgcccccttc
ctgaggaatgtagagctcatcaaacctatgcaaatcctctacaagggcacgctgagggtg
ctcctcgtcctgcttcacgacttcccagagttcctgtgtgactatcactacggcttctgt
gacgttattccacccaactgcatccagctccgcaacctcatcctcagtgccttcccacgc
aacatgaggcttcctgaccccttcacacccaatctgaaggtggacatgctgagtgagatc
aatatcgctcctcgcatcctgaccaacttcaccggtgtcatgccgtctcagttcaagaag
gatctggactcttatctgaagacgcgttcgcctgtcactttcctgtctgagctgcgcagt
aacctgcaggtgtcgaatgaaccaggaaaccggtacaacatccagctgatcaatgctcta
gtgttatatgtaggcacacaggcaattgctcacatccacaacaaaggcagcaccccctcc
atgagcaccattactcactctgcacacatggacatcttccagaaccttgctgtggacctg
gacactgagggacgttacctgttcctgaacgcgatcgccaatcagctgcgttaccctaac
agccacactcactacttcagctgcaccatgctttatctctttgctgaggccaacacagag
gccatccaggagcagatcaccagagttctgctggagaggctgatagtgaacaggcctcac
ccgtgggggcttctcatcaccttcattgagctgattaagaatcctgcctttaagttctgg
agtcacgactttgtgcactgtgcccccgagattgaaaagctgttccagtctgtagcccag
tgctgcatggggcagaagcaggcccagcaggtgatggagggaactggtgccagttaa
DBGET
integrated database retrieval system
