Kryptolebias marmoratus (mangrove rivulus): 108251140
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Entry
108251140 CDS
T05608
Symbol
capn1b
Name
(RefSeq) calpain-1 catalytic subunit b
KO
K01367
calpain-1 [EC:
3.4.22.52
]
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr04141
Protein processing in endoplasmic reticulum
kmr04210
Apoptosis
kmr04217
Necroptosis
kmr04218
Cellular senescence
kmr04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
108251140 (capn1b)
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
108251140 (capn1b)
04217 Necroptosis
108251140 (capn1b)
04218 Cellular senescence
108251140 (capn1b)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
108251140 (capn1b)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
kmr01002
]
108251140 (capn1b)
Enzymes [BR:
kmr01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.22 Cysteine endopeptidases
3.4.22.52 calpain-1
108251140 (capn1b)
Peptidases and inhibitors [BR:
kmr01002
]
Cysteine peptidases
Family C2: calpain family
108251140 (capn1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C2
Calpain_III
EF-hand_6
EF-hand_1
EF-hand_7
EF-hand_8
CAPN13-like_C_EFh
Motif
Other DBs
NCBI-GeneID:
108251140
NCBI-ProteinID:
XP_037830900
LinkDB
All DBs
Position
LG3:complement(30054303..30064842)
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AA seq
702 aa
AA seq
DB search
MFGGMSEQIQRDRDRGRGLGSVQQAVRYLNQDFQALKEESLLNRTLFQDPVFPAEPASLG
FKELGPHSSKTRGVEWKRPTELSADPQFIVGGATRTDICQGALGDCWLLAAIGSLTLNER
LLHRVVPHGQSFNYQYAGIFHFQFWQFGEWVDVVIDDQLPVKDGELLFVHSAEGSEFWSA
LLEKAYAKLNGSYEALSGGSTTEGFEDFTGGVSEMYELKKAPRDLHRIISKALERGSLLG
CSIDISSTFDMEAVTFKKLVKGHAYSLTGLRHVEYRGRQERLIRIRNPWGQVEWTGAWSD
SSSEWNHVDSAEKDELLCKMEDGEFWMSFQEFLRQFSRLEICNLTPDALSQDSTSFWTTM
TFEGSWRKGSTAGGCRNHPNTFWINPQYKISLLEEDDDPEDDEGACSFLVALMQKDRRLY
RRHGQDMHTIGFAIYEMPKEVQGSPRVHMKKEFFLRQSSCACSESFINLREVSARLRLPP
GEYLIVPSTFEPSKEADFVLRVFTEKQSETSDMDDTVVVNMEEEEEISESDIDDSFRSMF
AQLSGDDMEISARELRTVLNRVLSKHRDLQTDGFSLESCRAMVSLMDKDGSARLGLLEFQ
ILWNKIRKWLGIFREFDLDKSGCMNSYEMRLAMENRGFRLNNKLYQMLIARYADNEIIDF
DNFTCCLIKLEAMFKTFQILDRDGTGTVELNFIEWLFVTMCG
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atgtttggtggcatgtcagaacagatccagagggaccgggaccggggcagaggtctgggc
tcagtccagcaggcggttcggtacctgaaccaagacttccaggccctgaaggaggagagt
ctgctgaacagaaccctgttccaggaccctgtgttcccagcagaacccgcctcattgggc
ttcaaagaactcggaccgcacagctccaagaccagaggggtggagtggaagagaccaacg
gagctgtcagctgaccctcagttcattgtgggcggagccacaaggacggatatctgtcaa
ggagcgctgggagactgctggctgcttgctgctatcggctctctgactctcaacgaacgg
ctgttgcatcgtgtggttcctcacggccagagcttcaactaccaatatgctggtattttt
cacttccagttctggcagttcggggagtgggtggacgtggtgatcgatgaccagctgccg
gttaaagacggcgagctgctgtttgttcattctgcagagggaagcgagttctggagcgcc
ctgctggagaaagcctacgccaagctgaatggatcctacgaggcactgtccggcggcagc
accactgaaggttttgaggatttcacaggtggtgtgtcagagatgtacgagctgaagaag
gctcccagagatcttcatcgtatcatcagcaaagctctggaaagaggatctctgctgggc
tgctccatcgatatcagcagcaccttcgacatggaggccgtcaccttcaagaaactggtg
aaaggccatgcctactccctgacgggcctcagacatgtcgagtaccgtggccggcaggag
cgtctgatccggatcaggaacccctggggacaggtggagtggactggagcctggagcgac
agctcctcggagtggaaccacgtcgactctgcagagaaggatgagttgctctgtaagatg
gaagacggggagttctggatgtcattccaggagttcctgcgtcagttttcacgcttggag
atctgcaacttgactccagatgctctaagtcaagactccaccagcttctggaccaccatg
acatttgagggcagctggaggaaaggaagcaccgccgggggctgcaggaaccacccaaac
accttctggatcaaccctcagtataagatctccctgctggaggaagatgacgacccagag
gacgacgagggcgcctgtagcttcctggtggctctgatgcagaaagaccgccgcctctac
cgccgccacggacaggacatgcacaccatcggcttcgccatctatgagatgcctaaggag
gtccaaggttctcccagagtccacatgaagaaggagttcttcctgcgtcagtcctcctgt
gcttgctctgagtcctttatcaacctgagggaggtgagcgccaggctccgcctcccgcct
ggcgagtacctgattgtcccgtccacatttgaaccgtcgaaggaggcggactttgtcctg
agggtgttcacagagaaacagtctgagaccagcgacatggacgacaccgtggtggtaaac
atggaggaggaggaggaaatctctgagagcgacattgacgactccttcaggtccatgttc
gctcagctgtctggagacgacatggagatctcagcccgagaactcaggactgtccttaac
agagttttgtccaaacatagagacctgcagactgatggattcagcttggagtcctgcagg
gccatggtcagcctcatggataaagatggcagcgctcggcttggtctgctggagtttcag
atcctttggaacaagatcaggaagtggctgggaatcttcagggagttcgacctggataag
tctggttgcatgaactcctatgagatgcgacttgcgatggagaaccgcgggttcagactg
aacaacaagctgtaccagatgctgatcgctcgatatgctgacaacgagattattgacttt
gataatttcacctgctgcctcatcaagctggaggccatgttcaagaccttccagatactg
gacagagacgggacaggaaccgtggagttgaacttcattgagtggctctttgtgaccatg
tgtggctga
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