Kosakonia sp. SMBL-WEM22: HF650_23040
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Entry
HF650_23040 CDS
T08549
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
kob
Kosakonia sp. SMBL-WEM22
Pathway
kob03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
kob00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HF650_23040 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kob03021
]
HF650_23040 (rpoB)
03400 DNA repair and recombination proteins [BR:
kob03400
]
HF650_23040 (rpoB)
Enzymes [BR:
kob01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HF650_23040 (rpoB)
Transcription machinery [BR:
kob03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HF650_23040 (rpoB)
DNA repair and recombination proteins [BR:
kob03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HF650_23040 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
SPG4
Motif
Other DBs
NCBI-ProteinID:
QNQ22388
LinkDB
All DBs
Position
complement(4771436..4775464)
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIK
SYSGNSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVVFEIRDNKLQME
LVPERLRGETASFDIEANGKMYVEKGRRITARHIRQLEKDEIQHIEVPVEYIAGKVAAKD
YVDESTGELICPANMELSLDLLAKLSQAGHKRIETLFTNDLDHGPYISETVRVDPTNDRL
SALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRDSIEGSGIL
SNEDIIEVMKKLIGIRNGIGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVT
DEIHYLSAIEEGNYVIAQANTNLTEEGRFAEDLVTCRSKGESSLFSADQVDYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR
GGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVYLGEPIERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL
SEELQILEAGLFSRIHSVLVSGGVEADKLDKLPRDRWLELGLTDEAKQNQLEQLAEQYDE
LKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAK
LREFIQRAYDLGADVRQKVDLSTFSDDEVLRLAENLRKGMPIATPVFDGAKESEIKELLQ
LGGLPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP
ESFNVLLKEIRSLGINIELEDE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaaaaaacgtattcgtaaggattttggtaaacgtccacaa
gtactggatgttccctatctcctttctatccagcttgactcgttccagaagttcatcgag
caagatcctgaaggccagtacgggctcgaagcggcattccgctccgtgttcccgatcaag
agctacagcggcaattcggaactgcaatacgtcagctaccgtcttggcgaacccgtattt
gacgttaaagagtgtcaaatccgtggtgtgacgtactccgccccgctgcgcgtaaaactg
cgtctggtgatctacgagcgcgaagcgccggaaggcaccgtaaaagacattaaagaacaa
gaagtctacatgggcgaaatcccgctcatgaccgacaacggtacctttgttatcaacggt
actgagcgtgttatcgtttctcagcttcaccgtagcccgggcgtcttctttgacagcgac
aagggtaaaacccactcttccggtaaagtgctctataacgcacgtatcattccttaccgt
gggtcatggctggactttgagttcgatccgaaagacaacctgttcgttcgtatcgaccgc
cgtcgtaagctgccggcaaccatcattctgcgcgcgctgaactacaccactgaacagatc
cttgacctgttctttgaaaaagtggtcttcgagatccgcgacaacaagctgcagatggaa
ctggtaccggaacgcctgcgtggcgaaaccgcctccttcgatatcgaagccaacggcaaa
atgtatgttgagaaaggccgccgcatcaccgcgcgccacattcgtcagctggaaaaagac
gaaatccaacatatcgaagtgccggttgagtacatcgccggtaaagttgcggcgaaagac
tacgttgacgaatccactggcgagctgatctgcccggctaacatggagctgtcgctcgat
ctgctggcgaaactgagccaggctggtcacaaacgtattgaaacgctgttcaccaacgat
ctggatcacggcccgtacatctctgagaccgtacgcgtcgacccgactaacgatcgtctg
agcgcgctggtagaaatctaccgcatgatgcgcccgggtgagccgccgactcgcgaagcg
gctgaaagcctcttcgaaaacctgttcttctccgaagaccgctacgacctttctgcggta
ggccgcatgaagttcaaccgttctctgctgcgcgacagcattgaaggttccggtatcctg
agcaacgaagacatcatcgaagtgatgaaaaagctcatcggtatccgtaacggcatcggt
gaagtggatgatattgaccacctcggcaaccgtcgtatccgttccgtaggcgaaatggcg
gaaaaccaattccgcgttggcctggtacgtgtagagcgtgcggtgaaagagcgtctctct
ctgggcgatctggacaccctgatgccgcaggacatgatcaacgccaagccaatttcggcg
gcggtgaaagagttctttggctccagccagctctcccagtttatggatcagaacaacccg
ctgtctgagattacgcacaaacgtcgtatctctgcacttggcccgggcggtctgactcgt
gagcgcgcaggctttgaagttcgagacgtacacccgactcactacggtcgcgtatgtcca
atcgaaacgcctgaaggtccgaacatcggtctgatcaactccctgtccgtctatgcacag
actaacgagtacggcttcctcgaaacgccgtatcgtaaagtgactgacggcgtggtgact
gacgagatccattacctctctgcaattgaagagggtaactacgttatcgctcaggcgaac
accaacctgacggaagaagggcgttttgcagaagatctggtaacctgccgcagcaaaggc
gaatcaagcctcttcagcgcagaccaggttgactacatggacgtatccacccagcaggtg
gtctccgtcggtgcatccctgatcccgttcctggaacacgatgacgccaaccgtgcattg
atgggtgcgaacatgcaacgtcaggcggttccgactctgcgcgctgataagccgctggtt
ggtaccggtatggaacgtgctgttgccgttgactccggcgtaaccgctgttgcgaaacgt
ggcggtaccgttcagtacgtggatgcttcccgtatcgttatcaaagttaacgaagacgag
atgtacccgggcgaagcaggtatcgacatctataacctgaccaaatacacccgttctaac
cagaacacctgcatcaaccagatgccgtgtgtctacctgggtgagccgattgagcgcggc
gacgtgctggcagacggtccgtccaccgacctcggtgaactggcgctcggtcagaacatg
cgcgtagcgttcatgccgtggaacggttacaacttcgaagactccatcctcgtctccgag
cgtgtggttcaggaagatcgtttcaccactattcacatccaggaactggcttgcgtgtcc
cgtgacaccaaactggggccggaagagatcaccgctgatatcccgaacgtgggtgaagct
gcgctctccaaactggatgaatccggtatcgtttacatcggtgcagaagtgaccggcggc
gacattctggttggtaaggtaacgccgaaaggtgaaacccagctgacgccagaagagaaa
ctgctgcgtgcgatcttcggtgagaaagcgtctgacgttaaagactcttctctgcgcgta
ccaaacggtgtttccggtacggttatcgacgttcaggtcttcacccgcgatggcgtggaa
aaagacaaacgtgcgctggaaatcgaagagatgcagctcaaacaggcgaagaaagacctg
tctgaagaactgcagatcctcgaagctggcctgttcagccgtatccactccgtgctggta
tccggtggcgttgaagctgataagctcgacaaactgccgcgcgaccgctggctggaactc
ggcctgaccgacgaagcgaaacagaatcagctggaacagctggctgagcagtacgacgaa
ctgaaacacgagttcgagaaaaaactcgaagcgaaacgccgtaagatcactcagggcgac
gatctggcaccgggcgtgctgaagattgttaaggtttatctggccgttaaacgtcagatc
cagcctggtgataagatggcaggtcgtcacggtaacaagggtgttatctccaagatcaac
ccgatcgaagatatgccatacgatgaaaacggtacgccggtagacatcgtactgaacccg
ctgggcgtaccgtctcgtatgaacatcggtcagatccttgaaacccacctgggtatggct
gcgaaaggtattggcgacaagattaacgccatgctgaaacagcagcaggaagtcgcgaaa
ctgcgcgagttcatccagcgtgcatacgatctgggcgctgacgttcgtcagaaagtcgac
ctgagcaccttcagcgatgatgaagtgctgcgtctggctgaaaacctgcgtaaaggcatg
ccgatcgcaacgccggtcttcgacggtgcgaaagagtctgaaatcaaggaactgttacag
ctgggtggcctgccgacttccggtcagatcacactgttcgacggtcgtaccggtgagcag
ttcgagcgccaggttaccgttggctacatgtacatgctgaaactgaaccacctggttgat
gacaaaatgcatgcgcgttccaccggttcctacagcctggttactcagcagccgctgggt
ggtaaggcgcagttcggtggtcagcgcttcggggagatggaagtatgggcgctggaagcc
tacggcgcggcatacaccctgcaggaaatgctcaccgttaagtctgatgacgtgaatggt
cgtaccaagatgtataagaacatcgtggacggcaaccatcagatggaaccggggatgcca
gagtccttcaacgtactgttgaaagagattcgttcgctgggtatcaacatcgagctggaa
gacgagtaa
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