Kordia sp. SMS9: KORDIASMS9_01361
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Entry
KORDIASMS9_01361 CDS
T05562
Symbol
ribD
Name
(GenBank) riboflavin biosynthesis protein RibD
KO
K01493
dCMP deaminase [EC:
3.5.4.12
]
Organism
kos
Kordia sp. SMS9
Pathway
kos00240
Pyrimidine metabolism
kos01100
Metabolic pathways
kos01232
Nucleotide metabolism
Brite
KEGG Orthology (KO) [BR:
kos00001
]
09100 Metabolism
09104 Nucleotide metabolism
00240 Pyrimidine metabolism
KORDIASMS9_01361 (ribD)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
kos02044
]
KORDIASMS9_01361 (ribD)
Enzymes [BR:
kos01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.4 In cyclic amidines
3.5.4.12 dCMP deaminase
KORDIASMS9_01361 (ribD)
Secretion system [BR:
kos02044
]
Type II secretion system
Competence-related DNA transformation transporter (DNA-T) core components
KORDIASMS9_01361 (ribD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
dCMP_cyt_deam_1
MafB19-deam
APOBEC_N
SNAD4
Bd3614-deam
APOBEC4_like
NAD1
APOBEC2
APOBEC3
APOBEC1
APOBEC4
Inv-AAD
NAD2
Motif
Other DBs
NCBI-ProteinID:
AXG69142
UniProt:
A0A345GXV4
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All DBs
Position
1514792..1515226
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AA seq
144 aa
AA seq
DB search
MLKQKKAKYDHAYLRMAKEWGKLSYCQRRQVGAIIVKDRMIISDGYNGTPSGFENFCEDE
EGYTKWYVLHAEANAILKVAASTQSCVGATLYITMSPCKECSKLIHQSGITRVVYVDAYK
DDSGIQFLKKAGVEVEHIPSVEAS
NT seq
435 nt
NT seq
+upstream
nt +downstream
nt
atgctcaaacaaaaaaaagcaaaatacgatcacgcctatttgcgcatggcaaaagaatgg
ggaaaactttcctattgtcaacgaagacaagttggcgcgattattgtcaaagatagaatg
atcatttctgatggttacaacggaacaccttcaggatttgaaaatttctgtgaagatgaa
gaaggctacacaaaatggtatgtattgcatgcggaggcaaacgccatcttaaaagtagca
gcttctacgcaatcctgtgttggtgccacattgtatattacgatgtcgccatgtaaggaa
tgtagtaagctgattcatcaatcaggaattacgagagttgtgtatgtagatgcgtacaaa
gatgattcaggcatacaatttttaaaaaaagcaggcgttgaagtagaacacattccttcg
gttgaagcgtcttaa
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