Kordia sp. SMS9: KORDIASMS9_03511
Help
Entry
KORDIASMS9_03511 CDS
T05562
Symbol
dbpA
Name
(GenBank) ATP-dependent RNA helicase DbpA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
kos
Kordia sp. SMS9
Pathway
kos03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kos00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KORDIASMS9_03511 (dbpA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kos03019
]
KORDIASMS9_03511 (dbpA)
03009 Ribosome biogenesis [BR:
kos03009
]
KORDIASMS9_03511 (dbpA)
Enzymes [BR:
kos01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KORDIASMS9_03511 (dbpA)
Messenger RNA biogenesis [BR:
kos03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KORDIASMS9_03511 (dbpA)
Ribosome biogenesis [BR:
kos03009
]
Prokaryotic type
rRNA helicases
KORDIASMS9_03511 (dbpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
P-loop_SecA
AAA_19
AAA_30
PhoH
Motif
Other DBs
NCBI-ProteinID:
AXG71254
UniProt:
A0A345H3W6
LinkDB
All DBs
Position
4006793..4008106
Genome browser
AA seq
437 aa
AA seq
DB search
MSKIIKNQREILAKLGIERLNEMQEEAKLSISSHPNTILLSPTGTGKTLAFLMPIIAELD
INSDAVQVVILAPSRELAIQIAQVTRDMGTGFKVNEVYGGRNFSKDKVDLKHNPAILVGT
PGRIADHLRRETFDTRAIKTLVLDEFDKSLEVGFEEEMKEIVSLLPHIEKRVLTSATKDM
EIPQFVGMNNPLTINYLEEKIAKLTVKRILSPTKDKLDTLLNTISLMANQPGIIFCNFKN
TIQYVSDFLNNNGIPHGCFYGGMEQKDRERALIKFRNGTHQLIIATDLAARGIDVPEIKF
IVHYQLPLKAQEFTHRNGRTARMHAEGTAFVLQWEEETVPDFISEVEVIEEIPTTKRPKA
SGWKTLFISGGRKDKISKGDIAGLFMKQGKLTKDELGMIELKSDCAFVAVKASKVKEVIQ
NTNNTRLKKKKVRVSRI
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaatcataaaaaatcagcgagaaatcttagcaaaattaggcattgaacgccta
aatgaaatgcaggaagaagccaaactttcaatcagttcgcatccaaatacaatcttactt
tcaccaacaggaacgggaaaaacactggcatttttaatgccgataattgccgaattggat
atcaatagtgatgccgtgcaagttgttattttagcgccgtcgcgcgaattggcaattcaa
attgcacaagtcacacgcgacatgggcacaggcttcaaagtcaatgaagtatatggcgga
cgcaatttttctaaagacaaagtcgatttaaaacacaatccggcaatattagtaggaaca
cctggaagaatcgcagatcatttgcgcagagaaacctttgatacacgcgcgattaaaacc
ttggtcttagatgaatttgacaaatcactcgaagtcggttttgaagaagaaatgaaagaa
atcgtttcgttgttaccacacattgaaaaacgtgtattgacttctgcaacaaaagacatg
gagattccgcagtttgtcggaatgaataatccgctcacgatcaattatctagaagaaaaa
atcgccaaactgacggtaaaacggatactttcacccacaaaagacaaactagatacgctt
ttaaacacgatttcgctcatggcgaatcaacccggaatcatcttttgtaactttaaaaat
accattcagtacgtaagtgactttctcaacaataacggcattccacacggttgtttctat
ggcggaatggaacaaaaagatcgcgaacgcgcattgatcaaattccgaaacggaacgcac
caactcatcattgcaacagacttggctgcgcgcggaattgacgttccagaaatcaaattt
attgtgcattatcaattgccattaaaagcacaggaattcacacatcgtaacggtcgtaca
gcacgtatgcacgcagaaggaacggcgtttgtattgcaatgggaagaagaaacggttcca
gatttcatttctgaagtagaagtaattgaagaaattccaacgaccaaaagaccgaaagct
tctggctggaaaaccttatttatttctggcggacgaaaagacaaaatctccaaaggtgac
atagccggtttattcatgaagcaaggaaaacttaccaaagacgaattgggaatgattgaa
ttgaagagcgattgtgcatttgtagcggtgaaagcttccaaagtcaaagaagtcattcaa
aacacaaataatacacgcttgaagaagaaaaaggtgagagtttcgcgtatctaa
DBGET
integrated database retrieval system
