Kosmotoga pacifica: IX53_09070
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Entry
IX53_09070 CDS
T03949
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
kpf
Kosmotoga pacifica
Pathway
kpf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
kpf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
IX53_09070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kpf03021
]
IX53_09070
03400 DNA repair and recombination proteins [BR:
kpf03400
]
IX53_09070
Enzymes [BR:
kpf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
IX53_09070
Transcription machinery [BR:
kpf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
IX53_09070
DNA repair and recombination proteins [BR:
kpf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
IX53_09070
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
AKI97947
UniProt:
A0A0G2Z8R4
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All DBs
Position
1917403..1920927
Genome browser
AA seq
1174 aa
AA seq
DB search
MRKASFAKRERWVFGKVVEPLEIPNLIEIQTRSFQWFIDEGLLSVLKKYSPIKSQIQRSD
IRKGEKGFTLDFVSTRVGKPKHTIQECKDKGLTYSVPLYVTVRITDLASGEIKEEEAFFG
YLPYMTDSASFVINGAERVIVNQLVRSPGVYFVDEPTKSSSGAMPILVAHFLPVKGAWLE
ILLNPNKNILQARIDRRRKMNLFLLLKALGYVDDLDILRLFIHEVDAKDEISLFEHVGSR
LLEEVSSKGSVIAEKGAVLTEALAKEILESDVKTVKLPMPVAMKTLESLHKTYGEDLNQD
EAYLAIFRKLRPGEIPRINAAKNYLHGLYFEPDRFDFSDVGRYKLNHRLKRVYRDYLIEV
EGRDDVPEDIKYDEKSLALVPMDIVLAARHLTEIQSHPEMLDTKDHLGNKRVRTVGELMQ
TEFEKAFIRIHKLLEERLTLYNSLEKLSVQGLVNVRTLMTTLHQFFATSQLSQFMDQVNP
LAELTHKRRLSAIGPGGLKREHARFEVRDVHHSHYGRMCPIETPEGANIGLMTSLSTYAT
LDKYGFLLTPYRKVVKGKLTDEIVFLGADEEENYRIAQSTIDVDEEKRIVAETVEVRHAG
EVKFVSRDEVELMAISPKQIVSVSTSLIPFLEHDDANRALMGSNMQRQAVPVIKPEAPIV
GTGVEAVAARDSGYVVLAKYRGIVEKVDARKIVIKRLDENDKPVLGSDGKPVYDEYLLQK
FIRTNQDTTINQRPIVSKGEVIEKGDPIADGPSTDMGELALGKNVLVAFMPWEGYNFEDA
ILVSQELLEEETFTTLHIEMYETVARDTQLGPEEITADIPNVSKELLRNLDENGIVRVGA
YVSSGDILVGKVTPKGESDTTPEEKIIRSVFGDRGRDVKDTSLKVPHGVEGRVIDVKVFD
KEDISELGSGINKLVKVYVACRKPLDVGDKLAGRHGNKGVVSNIIPKEDMPFLPDGTPIQ
IVLSPLGVPSRMNVGQVLETHLGWLGKLTNRYFATPIFDGAKEYEIMEELYRARKEKNLD
AGDSEKEMNGKVILRDGRTGEPFDSPIVVGVMYMLKLVHIAKDKIHARSTGPYSLIHQQP
LGGKAHFGGQRFGEMEVWALEAHGAAHTLNEMLTIKSDDIKGRNEVYKAILKGHTIPEPG
LPESFKVLIKELQGLAMDVRAYDQDGNEVDVDKL
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgaggaaggcaagtttcgcgaagcgtgagcgctgggtctttgggaaagttgttgagccc
cttgaaattccaaacctgatcgagattcaaacccgttctttccaatggtttattgatgaa
ggactcctttcagtactcaagaagtattctcctatcaaatcccagattcaacgtagtgac
attcgcaaaggtgaaaagggcttcacactagattttgtttccaccagagtgggtaagcca
aagcacactattcaggaatgcaaggacaagggattgacttactccgttcccctttacgtt
accgtcagaataaccgatctcgctagtggtgagataaaagaagaggaagcgttttttggc
tacctcccttatatgacggacagcgcgtcctttgtcatcaatggggcggagagagttata
gtaaaccaacttgtcagatcacctggtgtatatttcgttgatgagccaacgaaatcatca
agtggtgcaatgcctattcttgtggctcactttttgcctgtcaaaggggcctggctggaa
atacttttgaaccccaataaaaacatcctccaggccagaattgatcgaagaaggaaaatg
aacctattcttgctcttgaaagcccttggatatgtagacgatcttgatattttgagactt
ttcattcatgaagttgatgcgaaagacgagattagtttgtttgaacatgtaggcagcaga
cttctcgaagaggtttcatcgaaaggaagcgtaatcgccgaaaagggagcggttctcacc
gaagctctggcgaaagagattctggaatcagacgtgaaaaccgttaaacttcccatgcca
gtagctatgaaaactctggaatctctccacaagacctacggtgaggatctcaatcaagac
gaggcctatctcgccatattcagaaagttgagacccggtgaaatccccagaataaatgcg
gcgaaaaattacctgcatggactgtactttgaaccggacagatttgacttttcagacgtg
ggaagatataagttaaatcacagactaaaaagggtgtacagggattacctcatcgaagtt
gagggaagagatgatgttcctgaagatattaaatacgatgaaaagtcccttgctctcgta
ccaatggatatcgttcttgcagcgaggcacctgactgaaatccaatcacatccggaaatg
ctggacaccaaggaccaccttggaaataagagagttagaactgttggtgaactcatgcag
acagagttcgaaaaggcatttataagaatacacaaactgctggaagagagacttacactg
tacaattctctcgaaaaattgtcagtacagggtctcgttaacgtcaggacactcatgacc
actcttcatcaattttttgcgaccagccagctttcgcagttcatggatcaagttaatcca
ctggcagaattaacacacaaaagaaggctttcggccattggtccaggtggtctaaagaga
gaacatgcaaggttcgaggtcagagacgtgcatcattcacattacggaagaatgtgtcct
atagaaacacccgaaggtgctaacattggtctcatgacatccctttcaacgtatgcaacg
ttggataaatacggattccttctaacgccttacagaaaagtggttaaaggaaaacttacg
gatgaaatagtatttctgggcgccgatgaagaagaaaattacagaatcgcccaatctaca
atagatgttgacgaggaaaagagaatcgtcgctgaaactgtcgaagtcagacacgcgggc
gaggttaaattcgtcagcagagacgaagttgaactcatggccatttctccaaaacagatc
gtcagtgtctcgacttccctcataccgttccttgaacacgacgacgccaaccgtgccctc
atgggatcaaacatgcagcgtcaggcggttcctgtaataaaacccgaagctccaatagtc
ggtacaggtgttgaagccgtagccgcaagagattcagggtacgttgtattggcaaaatac
agaggtatcgtagaaaaagtcgatgccagaaaaatcgttattaaacgccttgatgaaaac
gacaaacctgttcttggttctgatgggaaacctgtttacgatgagtatttgcttcaaaaa
tttatcagaaccaatcaggatacaacaataaatcaaagacccatcgtctcgaaaggtgaa
gtcattgaaaaaggtgaccccatagctgatggtccttcaacggatatgggtgaacttgcg
ctgggtaagaatgtgctagtcgcattcatgccttgggaaggatataatttcgaagacgct
atcctcgtgagccaggaattgctggaggaagagacctttaccacacttcacattgagatg
tacgaaaccgtagcacgtgatacccagttgggaccagaagagataacggccgatatccca
aacgtctctaaagaactcctcagaaatctggacgagaacggaatagtcagagttggtgct
tacgtgagttccggagatatccttgttggaaaggttacgcccaaaggggaatccgatacc
acacctgaagaaaagatcatccgctctgtattcggagacagaggtagagacgttaaagat
acttctctaaaagttccgcatggtgtggaaggaagggttatcgatgtgaaggtcttcgat
aaagaggatatctctgaacttggctcgggtataaacaaactcgtcaaagtttacgttgca
tgcaggaagcccctcgatgttggtgacaagctcgctggtcgtcatggaaacaaaggtgtt
gtttccaacatcattcccaaagaagacatgccattcctgcctgatggcacgccgatccag
atcgttctttcgcctctgggcgttccttctcgtatgaatgttggtcaggtccttgaaacg
catctcggctggctcggcaaactcaccaatagatacttcgcaacacccattttcgatggg
gctaaggagtatgaaataatggaagagctttatcgagcgagaaaagagaagaaccttgat
gccggtgattctgaaaaagaaatgaatggaaaggtaattctcagagacggaagaacggga
gaacctttcgattcaccgatcgtcgtaggtgtgatgtatatgctcaaactcgttcacata
gctaaagacaaaattcacgcccgttcaactggtccttactctctcatacaccagcagcca
ctcggcggaaaagcccatttcggtggtcagagatttggtgaaatggaagtctgggcattg
gaagcccatggtgctgctcacacactgaatgagatgctgactataaaatccgacgatatc
aaaggaagaaacgaggtttacaaggccattctgaaaggtcatacaatacctgaacccgga
ctaccggaaagtttcaaggttctcattaaagagctccagggccttgcaatggacgttcgc
gcttacgatcaggacggtaacgaggtcgacgtggataaattatga
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