Kocuria palustris: KPaMU14_06055
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Entry
KPaMU14_06055 CDS
T04045
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
kpl
Kocuria palustris
Pathway
kpl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
kpl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KPaMU14_06055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kpl03400
]
KPaMU14_06055
DNA repair and recombination proteins [BR:
kpl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KPaMU14_06055
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
KPaMU14_06055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_22
AAA_16
nSTAND3
Asp23
DUF815
AAA_5
AIG1
DUF87
Sigma54_activat
FlaG
Motif
Other DBs
NCBI-ProteinID:
ALB03162
LinkDB
All DBs
Position
1373081..1375204
Genome browser
AA seq
707 aa
AA seq
DB search
MSLAQEIHRVVAPFEVISEFEPAGDQPKAIAELTRRVEDGEKDIVLLGATGTGKSATAAW
LIESVQRPTLLMVQNKTLAAQLASELRELLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEK
DSSINEEVERLRHSATNALLTRRDVVVVSTVSCIYGLGTPEEYIQQMVTLRVGDQLDRDD
LLRQFVNMQYARNDMDFHRGTFRVRGDTVEIIPMYEEHAIRIEFFGDEIEAIYTLHPVTG
EIIRDEQEMYVFPASHYVAGAERMSRAIGQIEDELRDRLEELESQNKLVEAQRLRMRTTY
DLEMMEQMGYCNGIENYSRHIDGRAPGSAPHCLLDYFPDDFMLIVDESHVTIPQIGGMYE
GDMSRKRTLVDHGFRLPSALDNRPLTWDEFLERIGQTVYMSATPGPYELGQADGYVEQII
RPTGLVDPEIVVKPTKGQIDDLMDEITARTERDERVLVTTLTKRMAEDLTDYLLEHGVKV
QYLHSDVDTLRRVELLSELRQGVFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTT
SLIQTIGRAARNIDGQVHMYADKITDSMRTAIDETNRRRDVQIAYNKEHGIDPTPLRKRI
GDITEQLARESEDTHELLAARAGASGKLAPTKGRRDERTKEADAEAAKLRESRSDVPADS
LEDLAQQLTEQMNQAAMDLKFELAARIRDELHDVKREIRHVREASGS
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atgagtctggcccaggagatccatcgcgtcgtcgccccgttcgaggtcatctcggagttc
gagcccgccggcgaccagcccaaggccatcgccgagctgacgcggcgcgtggaggacggg
gagaaggacatcgtcctgctcggcgccaccggcaccggcaagtcggccacggccgcctgg
ctgatcgagtcggtgcagcggcccacgctgctcatggtccagaacaagaccctggccgcc
cagctggccagcgagctgcgggagctgctgccgaacaacgcggtcgagtacttcgtctcc
tactacgactactaccagccggaggcctacgtcccgcagacggacaccttcatcgagaag
gactcctcgatcaacgaggaggtcgagcggctgcggcactcggccacgaacgctctgctg
acccgtcgggacgtcgtggtggtctccaccgtgtcctgcatctacggcctgggcaccccg
gaggagtacatccagcagatggtcaccctgcgggtgggggaccagctcgatcgcgacgat
ctgctgcgccagttcgtgaacatgcagtacgcccgcaacgacatggacttccaccgcggg
acgtttcgcgtgcgcggggacacggtggagatcatccccatgtacgaggagcacgcgatc
cgcatcgagttcttcggcgatgagatcgaggccatctacaccctgcaccccgtcaccggc
gagatcatccgagatgagcaggagatgtacgtcttcccggcctcgcactacgtcgccgga
gccgagcgcatgtcccgtgccatcggccagatcgaggacgagctgcgggatcggctggag
gagctcgagtcccagaacaagctcgtcgaggcccagcggctgcgcatgcgcaccacgtac
gacctcgagatgatggagcagatgggctactgcaacgggatcgagaactactcccgccac
atcgacggccgcgcccccggctccgccccgcactgcctgctggactacttcccggacgac
ttcatgctcatcgtggacgagtcccacgtgacgatcccgcagatcggcggcatgtacgaa
ggcgacatgtcccgcaagcgcacgctcgtggaccacggcttccgcctgccctcggcgctg
gacaaccgccccctgacctgggacgagttcctggagaggatcgggcagacggtctacatg
tccgccacgcccggaccgtacgagctcggccaggcggacggctacgtcgagcagatcatc
cgccccaccggcctggtcgacccggagatcgtggtcaagcccaccaagggccagatcgac
gacctcatggacgagatcaccgcccgcaccgaacgcgacgagcgcgtcctggtcaccacg
ctgaccaagcgcatggccgaggacctcaccgactacctgctcgagcacggcgtcaaggtc
caatacctccactcggacgtggacaccctgcgccgggtggagctgctctccgagctgcgg
cagggcgtgttcgacgtcctggtcggcatcaacctgctgcgcgagggcctggaccttccg
gaggtctcgctggtggccatcctggacgcggacaaggagggcttcctgcgctccaccacc
tcgctgatccagaccatcggccgtgccgcgcgaaacatcgacggccaggtgcacatgtac
gcggacaagatcaccgactccatgcgcaccgccatcgatgagaccaatcgccgccgcgac
gtccagatcgcgtacaacaaggagcacgggatcgaccccactccgctgcgcaagcggatc
ggggacatcaccgagcagctggcccgcgagtcggaggacacccacgagctgctggccgcg
cgtgccggggccagcggcaagctggcgcccaccaagggcaggcgggacgagcgcaccaag
gaggcggatgccgaggccgccaagctgcgcgagtcgcgctcggacgtcccggcggacagc
ctcgaggacctggcccagcagctcacggagcagatgaaccaggcggccatggacctcaag
ttcgagctcgccgcgcgcatccgcgacgagctgcacgacgtcaagcgggagatccgccac
gtccgcgaggccagcggatcctga
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