KEGG   Kocuria palustris: KPaMU14_06055
Entry
KPaMU14_06055     CDS       T04045                                 
Name
(GenBank) excinuclease ABC subunit B
  KO
K03702  excinuclease ABC subunit B
Organism
kpl  Kocuria palustris
Pathway
kpl03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:kpl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    KPaMU14_06055
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:kpl03400]
    KPaMU14_06055
DNA repair and recombination proteins [BR:kpl03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     KPaMU14_06055
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      KPaMU14_06055
SSDB
Motif
Pfam: UvrB_inter UvrB Helicase_C ResIII UVR DEAD AAA_22 AAA_16 nSTAND3 Asp23 DUF815 AAA_5 AIG1 DUF87 Sigma54_activat FlaG
Other DBs
NCBI-ProteinID: ALB03162
LinkDB
Position
1373081..1375204
AA seq 707 aa
MSLAQEIHRVVAPFEVISEFEPAGDQPKAIAELTRRVEDGEKDIVLLGATGTGKSATAAW
LIESVQRPTLLMVQNKTLAAQLASELRELLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEK
DSSINEEVERLRHSATNALLTRRDVVVVSTVSCIYGLGTPEEYIQQMVTLRVGDQLDRDD
LLRQFVNMQYARNDMDFHRGTFRVRGDTVEIIPMYEEHAIRIEFFGDEIEAIYTLHPVTG
EIIRDEQEMYVFPASHYVAGAERMSRAIGQIEDELRDRLEELESQNKLVEAQRLRMRTTY
DLEMMEQMGYCNGIENYSRHIDGRAPGSAPHCLLDYFPDDFMLIVDESHVTIPQIGGMYE
GDMSRKRTLVDHGFRLPSALDNRPLTWDEFLERIGQTVYMSATPGPYELGQADGYVEQII
RPTGLVDPEIVVKPTKGQIDDLMDEITARTERDERVLVTTLTKRMAEDLTDYLLEHGVKV
QYLHSDVDTLRRVELLSELRQGVFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTT
SLIQTIGRAARNIDGQVHMYADKITDSMRTAIDETNRRRDVQIAYNKEHGIDPTPLRKRI
GDITEQLARESEDTHELLAARAGASGKLAPTKGRRDERTKEADAEAAKLRESRSDVPADS
LEDLAQQLTEQMNQAAMDLKFELAARIRDELHDVKREIRHVREASGS
NT seq 2124 nt   +upstreamnt  +downstreamnt
atgagtctggcccaggagatccatcgcgtcgtcgccccgttcgaggtcatctcggagttc
gagcccgccggcgaccagcccaaggccatcgccgagctgacgcggcgcgtggaggacggg
gagaaggacatcgtcctgctcggcgccaccggcaccggcaagtcggccacggccgcctgg
ctgatcgagtcggtgcagcggcccacgctgctcatggtccagaacaagaccctggccgcc
cagctggccagcgagctgcgggagctgctgccgaacaacgcggtcgagtacttcgtctcc
tactacgactactaccagccggaggcctacgtcccgcagacggacaccttcatcgagaag
gactcctcgatcaacgaggaggtcgagcggctgcggcactcggccacgaacgctctgctg
acccgtcgggacgtcgtggtggtctccaccgtgtcctgcatctacggcctgggcaccccg
gaggagtacatccagcagatggtcaccctgcgggtgggggaccagctcgatcgcgacgat
ctgctgcgccagttcgtgaacatgcagtacgcccgcaacgacatggacttccaccgcggg
acgtttcgcgtgcgcggggacacggtggagatcatccccatgtacgaggagcacgcgatc
cgcatcgagttcttcggcgatgagatcgaggccatctacaccctgcaccccgtcaccggc
gagatcatccgagatgagcaggagatgtacgtcttcccggcctcgcactacgtcgccgga
gccgagcgcatgtcccgtgccatcggccagatcgaggacgagctgcgggatcggctggag
gagctcgagtcccagaacaagctcgtcgaggcccagcggctgcgcatgcgcaccacgtac
gacctcgagatgatggagcagatgggctactgcaacgggatcgagaactactcccgccac
atcgacggccgcgcccccggctccgccccgcactgcctgctggactacttcccggacgac
ttcatgctcatcgtggacgagtcccacgtgacgatcccgcagatcggcggcatgtacgaa
ggcgacatgtcccgcaagcgcacgctcgtggaccacggcttccgcctgccctcggcgctg
gacaaccgccccctgacctgggacgagttcctggagaggatcgggcagacggtctacatg
tccgccacgcccggaccgtacgagctcggccaggcggacggctacgtcgagcagatcatc
cgccccaccggcctggtcgacccggagatcgtggtcaagcccaccaagggccagatcgac
gacctcatggacgagatcaccgcccgcaccgaacgcgacgagcgcgtcctggtcaccacg
ctgaccaagcgcatggccgaggacctcaccgactacctgctcgagcacggcgtcaaggtc
caatacctccactcggacgtggacaccctgcgccgggtggagctgctctccgagctgcgg
cagggcgtgttcgacgtcctggtcggcatcaacctgctgcgcgagggcctggaccttccg
gaggtctcgctggtggccatcctggacgcggacaaggagggcttcctgcgctccaccacc
tcgctgatccagaccatcggccgtgccgcgcgaaacatcgacggccaggtgcacatgtac
gcggacaagatcaccgactccatgcgcaccgccatcgatgagaccaatcgccgccgcgac
gtccagatcgcgtacaacaaggagcacgggatcgaccccactccgctgcgcaagcggatc
ggggacatcaccgagcagctggcccgcgagtcggaggacacccacgagctgctggccgcg
cgtgccggggccagcggcaagctggcgcccaccaagggcaggcgggacgagcgcaccaag
gaggcggatgccgaggccgccaagctgcgcgagtcgcgctcggacgtcccggcggacagc
ctcgaggacctggcccagcagctcacggagcagatgaaccaggcggccatggacctcaag
ttcgagctcgccgcgcgcatccgcgacgagctgcacgacgtcaagcgggagatccgccac
gtccgcgaggccagcggatcctga

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