Kocuria palustris: KPaMU14_07425
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Entry
KPaMU14_07425 CDS
T04045
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
kpl
Kocuria palustris
Pathway
kpl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kpl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KPaMU14_07425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kpl03019
]
KPaMU14_07425
03400 DNA repair and recombination proteins [BR:
kpl03400
]
KPaMU14_07425
Enzymes [BR:
kpl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KPaMU14_07425
Messenger RNA biogenesis [BR:
kpl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KPaMU14_07425
DNA repair and recombination proteins [BR:
kpl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
KPaMU14_07425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
RecQ_Zn_bind
Helicase_C
Fic-like_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
ALB03360
LinkDB
All DBs
Position
complement(1704558..1706408)
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AA seq
616 aa
AA seq
DB search
MTTSTAPQLETQALRILESVFGYESFRGKQAEIVEHVAAGGDAVVLMPTGGGKSLCYQIP
ALMRFGTGVVISPLIALMENQVDALAAVGVNAAYLNSSLSFEEADEIERSLLAGELDMVY
MAPERLVQPRTLQLLSRVQVSLFAIDEAHCVSQWGHDFRKDYLGLSVLAERFPDVPRIAL
TATATQATHEELTQRLSLQDAQHFVASFDRPNIQYRIVEKDQPRQQLLSLIRNEHPGDAG
IVYCLSRKSVEQTAAFLSKQGIDAEAYHAGLTESERSQRQARFLREDGVVMVATIAFGMG
IDKPDVRFVAHLDLPKSIEGYYQETGRAGRDGLPATAWLAYGLQDVVQLRRMIDQSEGTA
EHQRSQRQHLDAMLALCETMTCRRVQILSYFGQTGEPCGNCDNCLNPPQGWDATVPAQKI
LSAIIRLDRERRQHFGSGQLIDILRGKPNPRSTESNHEALSVWGIGQDLSPQQWKGLVRQ
LLARDVLAAVGDYATLALGPEADGVLRGRTTLELRKESGRSRASAPRGSRTTAAAARSEL
TPEEMELFEALRKWRTAQAKEQEVPAYVVFADATLIAIAQRRPETTSDLHGVSGIGAKKL
DRYGSAVVDVVTRTLS
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
gtgacgacctccacagcaccccagctggagacccaggcactgcggatcctcgaatcggtc
ttcggctacgagtccttccgcggcaagcaggcggagatcgtggagcacgtggccgcgggc
ggcgacgccgtcgtgctcatgcccaccggcggtggcaagtcgctgtgctatcagatcccc
gccctcatgcgcttcggcacgggcgtggtcatctccccgctgattgccctgatggagaac
caggtcgacgccctggctgcagtcggggtgaacgctgcgtacctgaactcgtcgctgtcc
ttcgaggaggccgacgagatcgagcggagcctgctggccggtgagctcgacatggtctac
atggcccccgagcggctcgtgcagccgcgcaccctgcagctgctctcgcgggtgcaggtc
tcgctgttcgcgatcgacgaggcgcactgcgtgtcccagtggggccacgacttccgcaag
gactacctgggcctgtccgtgctggccgagcgcttccccgacgtcccccggatcgccctg
accgccacggccacgcaggccacccatgaagagctcacgcagcggctgtccctgcaggac
gcccagcacttcgtggccagcttcgaccggcccaacatccagtaccggatcgtcgagaag
gatcagccgcgccagcagctgctgtccctgatccgcaacgagcaccccggagacgccggc
atcgtctactgcctgtcccgcaagtccgtggagcagaccgccgcgttcctgtccaagcag
gggatcgacgccgaggcctaccacgcgggtctcaccgaatccgagcgctcgcagcgccag
gcacgcttcctgcgggaggacggcgtggtcatggtcgccacgatcgccttcggaatgggc
atcgacaagcccgacgtccgcttcgtggcccacctggacctgcccaagtcgatcgagggc
tactaccaggagaccggccgcgcaggtcgcgacggtctgccggcgaccgcctggctggcc
tacggcctgcaggacgtggtgcagctgcggcggatgatcgatcagtccgagggcaccgcc
gagcaccagcgctcgcagcgccagcacctggacgccatgctcgcgctgtgcgagacgatg
acctgtcgccgcgtgcagatcctcagctatttcgggcagaccggtgagccctgcggcaac
tgcgacaactgcctgaacccgccccagggctgggatgccaccgtccccgcgcagaagatc
ctctcggcgatcatccgcctggaccgcgagcgtcgccagcacttcggctcggggcagctc
atcgacatcctgcgcggcaagccgaatccccgctccaccgagtccaaccacgaggcgctg
agcgtgtggggcatcggccaggacctcagcccgcagcagtggaagggcctggtccggcag
ctgctggcccgtgacgtcctggccgcggtgggggactacgccaccctggccctgggcccc
gaggccgacggcgtcctgcgcggtcgcaccacgctcgagctgcgcaaggagtcggggcgc
agcagggcctcggccccgcgcggatcgcggacgacggccgccgcggcgcgcagcgagctc
acgccggaggagatggagctcttcgaggcgctgcgcaagtggcgcacggcccaggcgaag
gagcaggaggtccccgcctatgtcgtgttcgccgacgccaccctgatcgcgatcgcccag
cgccgcccggagaccacctcggacctccacggcgtcagcggcatcggcgccaagaagctg
gaccgctacggctccgccgtcgtcgacgtggtcacccggaccctcagctga
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