Kosakonia pseudosacchari: IP581_01135
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Entry
IP581_01135 CDS
T06897
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
kpse
Kosakonia pseudosacchari
Pathway
kpse03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
kpse00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
IP581_01135 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kpse03021
]
IP581_01135 (rpoB)
03400 DNA repair and recombination proteins [BR:
kpse03400
]
IP581_01135 (rpoB)
Enzymes [BR:
kpse01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
IP581_01135 (rpoB)
Transcription machinery [BR:
kpse03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
IP581_01135 (rpoB)
DNA repair and recombination proteins [BR:
kpse03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
IP581_01135 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
SPG4
Motif
Other DBs
NCBI-ProteinID:
QOV64319
LinkDB
All DBs
Position
233402..237430
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIK
SYSGNSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVVFEIRDNKLQME
LVPERLRGETASFDIEANGKMYVEKGRRITARHIRQLEKDEIQHIEVPVEYIAGKVAAKD
YVDESTGELICPANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETVRVDPTNDRL
SALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRDSIEGSGIL
SKEDIIEVMKKLIGIRNGIGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVT
DEIHYLSAIEEGNYVIAQANTNLTEEGRFVDDLVTCRSKGESSLFSADQVDYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR
GGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVYLGEPIERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL
SEELQILEAGLFSRIHTVLVSGGVEAEKLDKLPRDRWLELGLTDEAKQNQLEQLAEQYDE
LKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAK
LREFIQRAYDLGADVRQKVDLSTFSDDEVLRLAENLRKGMPIATPVFDGAKESEIKELLQ
LGGLPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP
ESFNVLLKEIRSLGINIELEDE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaaaaaacgtattcgtaaggattttggtaaacgtccacaa
gtactggatgtcccatatctcctttctatccagcttgactcgttccagaagtttatcgag
caagatcctgaagggcagtacggtctggaagcggctttccgctccgtgttcccgattaag
agctacagcggcaattcggaactgcaatacgtcagctaccgtcttggcgaacctgttttt
gatgttaaagaatgtcagatccgtggcgtaacgtattccgctccgctgcgcgtaaaactg
cgtctggtgatctacgagcgcgaagcgccggaaggcaccgttaaagacattaaagaacaa
gaagtctacatgggcgaaattccgctcatgactgacaacggtacctttgttatcaacggt
actgagcgtgttatcgtttctcagctgcaccgtagtcctggcgtcttcttcgacagcgat
aagggtaaaacccactcatctggtaaggtgctttataacgcacgtattattccttaccgt
gggtcatggctggacttcgagttcgacccgaaagataacctcttcgtgcgtatcgaccgc
cgccgcaaactgccggcgaccattattctgcgcgcgctgaactacaccactgagcagatt
cttgatctgttctttgaaaaagttgtctttgaaatccgcgacaacaagttgcagatggaa
ctggtgccggaacgtctgcgtggcgaaactgcatccttcgatatcgaagcaaacggcaaa
atgtatgttgaaaaaggccgccgtattaccgcgcgccatattcgtcagctggaaaaagac
gaaattcaacacattgaagtaccggttgagtacatcgcaggcaaagttgcggctaaagac
tacgttgacgaatctactggcgagctgatctgcccggcaaacatggagctgtcgctcgat
ctgctggcgaagctgagccagtctggtcacaaacgtatcgaaaccctgttcaccaacgat
ctggatcacggtccgtacatctctgagactgtacgtgtcgacccgaccaacgatcgtctg
agcgcgctggtagaaatctaccgcatgatgcgccctggtgagccgccgactcgcgaagcc
gcggaaagcctgttcgagaacctgttcttctccgaagaccgctacgatctttctgcggtt
ggccgtatgaagttcaaccgttctctgctgcgcgacagcatcgaaggttccggtatcctg
agcaaagaagacatcatcgaagtgatgaaaaagctcatcggtatccgtaacggcatcggt
gaagtggatgatatcgaccacctcggcaaccgtcgtatccgttccgtcggcgagatggcg
gaaaaccaattccgcgttggcctggttcgtgtagaacgtgcggtgaaagagcgtctgtct
ctgggcgatctggataccctgatgccgcaggacatgatcaacgcgaagcctatctctgca
gccgttaaagagtttttcggttccagccagctgtcacagtttatggaccagaacaacccg
ctgtccgagattacgcacaaacgtcgtatctctgcactcggcccaggcggtctgacccgt
gagcgtgcgggctttgaagttcgagacgtacacccgacccactacggtcgcgtatgtccg
atcgaaacgcctgaaggtccgaacatcggtctgatcaactccttgtccgtgtacgcacag
actaacgaatacggcttcctcgaaacgccgtaccgtaaagtgaccgacggcgtggtgact
gacgagatccattacctttctgctatcgaagaaggtaactacgttatcgctcaggcgaac
accaacctgacggaagaaggtcgtttcgtagacgatttggtaacctgccgcagcaaaggc
gaatccagcctcttcagcgcagaccaggttgactacatggacgtttccacccaacaggtg
gtttctgtcggtgcgtccctgatcccgttcctggaacacgatgacgccaaccgtgcattg
atgggtgcgaacatgcaacgtcaggcggttccgactctgcgcgctgacaagccgctggtt
ggtaccggtatggaacgtgctgttgccgttgactccggtgtaaccgcggttgctaaacgt
ggcggtactgttcagtacgtggatgcctctcgtatcgttatcaaagttaacgaagatgag
atgtacccgggcgaagcaggtatcgacatctataacctgaccaaatacacccgttctaac
cagaacacctgtatcaaccagatgccgtgtgtttatctgggtgagccaattgagcgcggc
gatgtgctggcagacggcccgtccaccgacctcggtgaactggcgctcggtcagaacatg
cgcgtagcgttcatgccgtggaacggttacaacttcgaagactccatccttgtctccgag
cgtgtggttcaggaagatcgtttcaccactattcacatccaggaactggcgtgcgtgtct
cgtgacaccaagctggggccagaagagatcaccgcagacatcccgaacgtgggtgaagct
gcgctctccaaactggatgaatccggtatcgtttacatcggtgcggaagtgaccggcggc
gacattctggttggtaaggtaacgccgaaaggtgaaacccagctgacgccagaagagaaa
ctgctgcgcgcgatcttcggtgagaaagcgtctgacgttaaagactcttctctgcgtgta
ccgaacggtgtttccggtaccgttatcgacgttcaggtctttacccgcgatggcgtggaa
aaagacaaacgtgcgctggaaatcgaagaaatgcagctcaaacaggcgaagaaagacctg
tctgaagaactgcagatcctcgaagctggcctgtttagccgtatccacaccgtgctggtt
tccggcggcgttgaagctgagaagctcgacaaactgccgcgtgaccgctggctggaactc
ggcctgaccgacgaagcgaaacaaaatcagctggaacagctggctgagcagtatgacgaa
ctgaaacacgagttcgagaaaaaactcgaagcgaaacgccgcaaaatcactcagggcgat
gatctggcaccgggcgtgctgaaaatcgttaaggtttatctggctgttaaacgtcagatc
cagcctggtgataaaatggcaggtcgtcacggtaacaagggtgttatctctaagatcaac
ccgatcgaagatatgccatacgatgaaaacggcacgccggttgatatcgtactgaacccg
ctgggcgtaccgtcgcgtatgaacatcggtcagatccttgaaacccacctgggtatggct
gcgaaaggtatcggcgataagatcaacgccatgctgaaacagcagcaagaagtcgcgaaa
ctgcgcgaattcatccagcgtgcatacgatctgggcgctgacgttcgtcagaaagtcgac
ctgagcaccttcagcgatgatgaggttctgcgtctggcggaaaacctgcgtaaaggtatg
ccgatcgcaacgccggtatttgacggtgcgaaagagtctgaaatcaaggaactgttacag
ctgggtggcctgccgacttccggtcagatcacactgttcgacggtcgtaccggtgagcaa
ttcgagcgccaggttaccgttggctacatgtacatgctgaaactgaaccacctggttgat
gacaagatgcatgcgcgttctaccggttcttacagcctggttactcagcagccgctgggt
ggtaaggcgcagttcggtggtcagcgcttcggggagatggaagtgtgggcgctggaagca
tacggcgcggcatacaccctgcaggaaatgctcaccgttaagtctgatgacgtgaacggt
cgtaccaagatgtataaaaacatcgtggacggcaaccatcagatggaaccgggtatgcct
gagtccttcaacgtactgttgaaagagattcgttcgctgggtatcaacatcgagctggaa
gacgagtaa
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