Kosakonia pseudosacchari: IP581_08905
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Entry
IP581_08905 CDS
T06897
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
kpse
Kosakonia pseudosacchari
Pathway
kpse03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kpse00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IP581_08905 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kpse03019
]
IP581_08905 (rne)
03009 Ribosome biogenesis [BR:
kpse03009
]
IP581_08905 (rne)
Enzymes [BR:
kpse01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
IP581_08905 (rne)
Messenger RNA biogenesis [BR:
kpse03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
IP581_08905 (rne)
Ribosome biogenesis [BR:
kpse03009
]
Prokaryotic type
rRNA processing factors
IP581_08905 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
QOV65742
LinkDB
All DBs
Position
complement(1907186..1910332)
Genome browser
AA seq
1048 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPANYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSSLELPDGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLS
LSILRLIEEEALKENTQEVHAIVPVPVASYLLNEKRAAVSAIEARQGGVRCVIVPNDQME
TPHYSVLRVRKGEETPTLSYLLPKLHEEEMALPSEEEYAERKLPEQPALATFVMPDVPPA
PQAPAASASQAQPAATPAAAPGLLGRFFSALKGLFASEPAPAPVEVKEEKKGEKQERQQD
RRKSRQGNRRDRNDRRDNRSEGNEARESRDNREGREENRRNRREKSQQNAEARESRQPAA
VDETEKAKSRDEQQQPRRERNRRRNDDKRQAQQDVKELNRDEQPAQETEQEERVQVMPRR
KQRQLSQKVRIGGDNNAENRVEEGPEQNAVAQNTQLAKVDLPAVVETAPVQEQDENAEAR
ENAMPRRSRRSPRHLRVSGQRRRRYRDERYPLQSAMPLTVACASPEMASGKVWIRYPVPR
QQEEQQTQELAVENNAAPEQDIAPAMAEAQLVAHPQADIVEPQATVENVEPVVVEPQAAI
EAPQPVAVETAHPEVIDTPVDEQPQLIAEEDRTVAQEVAEEAEPAQQEVASAAETPATDA
VEETAEETAAPVVAEPVKAPVVAHVAPVARKVATAPMTKAPAPAYVPDAPRHSDWVRPHF
VFEGKGSAGGHSATHAATAPATKPPAAE
NT seq
3147 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcaactcagcaagaagagttgcgtgtcgcacttgttgat
ggtcaacgcctgtacgacctggatatcgaaagcccgggacacgagcagaaaaaagcgaac
atctacaaaggtaaaatcacccgcattgaacccagccttgaagccgcattcgttgattac
ggtgccgagcgtcacggtttcctccccctcaaagagatcgcccgcgaatacttccccgct
aattacaacgcgcatggacgtccgaacatcaaagacgtactacgtgaaggtcaggaagtc
atcgttcagattgataaagaagagcgcggcaacaaaggcgcggcactgaccacctttatc
agccttgcgggcagctacctggtgctgatgccgaacaacccgcgtgcgggcggcatttct
cgtcgtattgaaggcgacgatcgcaccgaactgaaagaagcgctctccagcctggaatta
ccggatggtatggggctcatcgtacgcaccgcaggcgtgggcaaatccgccgaagcgctg
cagtgggatttgagcttccgtctgaaacactgggaagctatccagaaagccgccgaaagc
cgcccggcgccgttcctgatccatcaggaaagcaacgtgattgtgcgcgctttccgtgac
tatctgcgtcaggatatcggcgaaatccttatcgataacccgaaagtgcttgagctggcg
cgccagcacatcgctgcgctgggtcgtccggatttcagcagcaaaattaaactgtacacc
ggggaaatcccgctgttcagccattaccagattgagtcgcagattgaatccgctttccag
cgtgaagtccgtctgccatccggtggctctatcgttattgactccaccgaagcgctgacc
gccatcgatatcaactccgcacgcgcaacgcgcggtggcgatattgaagagaccgccttt
aacaccaacctggaagcggcagatgagatcgctcgccagctgcgtctgcgtgacctgggc
ggcctgatcgttatcgactttattgatatgaccccggtgcgccatcagcgcgcggtggaa
aaccgtctgcgagaagcggtacgtcaggatcgtgcgcgtattcagatcagccatatttcc
cgcttcggcctgctggagatgtcccgccagcgcctgagcccatcgttgggcgagtccagc
catcatgtctgcccgcgttgtagcggtacgggtaccattcgtgataacgaatccctgtcg
ctgtcgattctgcgtctgattgaagaagaagcgctgaaagaaaacactcaggaagtgcat
gcgattgtaccggttccggtcgcgtcatatctgttgaacgaaaaacgtgccgcggtaagc
gctatcgaagcccgtcagggtggcgtccgctgcgtgatcgtgccaaacgaccagatggaa
accccgcactactccgtactgcgcgtgcgtaaaggcgaagagacgccaacgctgagctat
ctgctgccgaaactgcacgaagaagagatggcgctgccgtctgaagaagagtacgccgag
cgtaagttacctgaacaaccagcactggctactttcgttatgccggacgttccgccagca
ccacaagcaccggccgcaagcgcgagtcaggcgcaacctgccgcaacaccggcagcagcg
ccaggcctgcttggtcgtttcttctctgcactgaaaggcttgttcgcgagtgaacctgct
ccggcgccggttgaagtaaaagaagagaaaaaaggcgagaaacaagagcgtcagcaggat
cgccgtaaatcacgccagggcaaccgtcgcgatcgtaatgaccgccgtgacaaccgcagc
gaaggcaatgaagcgcgcgaaagccgtgataaccgcgaaggccgcgaagagaatcgtcgt
aaccgtcgtgagaaatcacagcaaaacgccgaagcccgtgaatctcgccagccggccgct
gttgatgaaacagaaaaagcgaaatcgcgtgacgagcagcagcaacctcgccgcgagcgc
aaccgtcgtcgtaacgatgataaacgccaggcgcagcaggatgtcaaagagctgaaccgc
gatgaacaacctgctcaggaaaccgaacaggaagagcgcgtacaggtcatgccgcgtcgt
aaacagcgtcaacttagccagaaagtacgaattggcggtgacaacaacgcagaaaaccgc
gttgaagaaggccccgaacagaacgccgtagcgcaaaacacgcagctggcgaaagtcgac
ctgccagcagtggttgaaaccgcaccggtacaggaacaggatgaaaatgctgaagcacgc
gaaaacgcgatgccgcgccgttcgcgccgttctccgcgccacctgcgtgtgagcggtcag
cgtcgccgtcgctaccgtgatgaacgctatccgctgcaatctgccatgccgttgaccgtc
gcctgtgcgtcaccggaaatggcgtccggtaaagtgtggatccgctacccggttccgcgc
cagcaggaagagcagcagactcaggaactggccgttgaaaacaacgccgcccctgaacag
gatatcgctccggcgatggctgaagcacaactggttgcacatccgcaagcggacattgtt
gagccgcaggcgacggttgaaaatgtcgagccggtagtggttgaaccgcaagccgcgatt
gaagcaccgcagccggttgcagttgaaaccgctcacccggaagtcattgacacgccggta
gatgaacaaccgcagctgattgctgaagaagatcgaactgttgcgcaggaagtagctgaa
gaagccgaaccagcacagcaggaagtcgcgtcagcagcagaaacgccagccactgatgcg
gtagaggaaactgccgaagaaacggctgcgccagttgttgccgagccggtgaaagcgccg
gtagtagcgcacgttgctccggtagcacgcaaagtggctaccgcgccaatgaccaaagcg
ccagcgcctgcctatgtgccggacgcgccgcgtcacagtgactgggtacgcccgcacttc
gtcttcgaaggtaaaggttctgcgggtggccacagcgccacgcacgcagcgaccgccccc
gcgacgaaaccgccagcggctgagtaa
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