Kosakonia pseudosacchari: IP581_20850
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Entry
IP581_20850 CDS
T06897
Symbol
csrD
Name
(GenBank) RNase E specificity factor CsrD
KO
K18765
RNase E specificity factor CsrD
Organism
kpse
Kosakonia pseudosacchari
Brite
KEGG Orthology (KO) [BR:
kpse00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kpse03019
]
IP581_20850 (csrD)
Messenger RNA biogenesis [BR:
kpse03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
IP581_20850 (csrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
GAPES4
GDPD
DUF5934
Motif
Other DBs
NCBI-ProteinID:
QOV63653
LinkDB
All DBs
Position
complement(4398988..4400925)
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AA seq
645 aa
AA seq
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MRLTTKFSAFVTLLTGLAFFVTLIGCSLSFYNAIQNKVANRVEAVAAIIDTRLVSTPVSR
LLPQLNELMVPVDIIEIQIKQGRRTVLSYAHNGSYRPAGSNYQYRELHIPSLKNPGFTFT
LVYQDPMANYFRSLLTTAPLTVAIGFMIVILFLSVRWLRRQLSGQELLETRATRILNGER
GPQVRGSIYEWPSRTSSALDVLLTDIQFASDQRSRMDTLIRSYAAQDKRTGLNNRLFFDN
QLATLLEDQEKVGSHGVVMMIRLPDFDLLRDSGGTTTEEYLFTLINLLSTFIMRYPGALL
ARYHRSDFAVLLPHRTLKEAESIAGQILKAVDGLPPNKTLTREDIMHIGICAWRSGQAGV
QVMEHAEAAARNAVLQGGNSWSVYDDTLPEQGRGNVRWRTLIEQMLSRGGPRVYQKPAIN
RDGQVHHRELMCRIFDGEQEVIAEEYMPMVQQFGLAEEYDRLQVTRLIPFMGFWPEENLA
MQITVESLIRPRFQRWLRDILMQCEKSQRKRIIFELAEADVCQHISRLQSVVRLINALGA
RVVVNQAGLTLVSTSWIKALDVELLKLHPGLVRNIEKRTENQLLVQSLVEACKGTRTRVF
ATGVRSRGEWQTLVERGVAGGQGDFIAASQPLDTNVKKYSQRYSV
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atgcgattaacgacgaaattttcagcttttgtgacgctactgacagggttggcgtttttc
gtcaccctgattgggtgctcactgagcttctataacgctattcaaaacaaggttgccaat
cgtgtggaagcggtggcggcaattattgatacgcgcctggtctcaacgccggtttcccgg
ctgttgccgcagctcaatgaattgatggtgccggtagacattatcgagattcagattaag
caaggccggcgcacagtgctcagttatgcgcataacggaagttatcgcccggcgggcagc
aactatcaatatcgggaactgcatattccctccctgaaaaatcccggtttcaccttcacg
ctggtttatcaggatcccatggcgaattactttcgttcgctgttaactaccgcgccgctg
acggtggcgatcggttttatgatcgtgatcctctttctctccgttcgctggttacggcga
cagctttccgggcaggaactgctggagacgcgcgcgacgcggatcctcaacggcgagcgt
gggccacaggttcgcggcagcatctatgagtggccatcccgcaccagtagtgcgctggat
gtgttgctgaccgatatccagtttgccagcgatcaacgtagccgcatggatacgcttatt
cgctcctacgccgcgcaggacaagcggacgggcctgaataaccgcctgttttttgataat
cagctcgccacgctgctggaagatcaggaaaaagtgggctcgcacggtgtagtgatgatg
atccgtttgccggactttgatctgctgcgggatagcggtggaaccaccaccgaagagtat
ctctttacgctcattaacctgctttctacctttattatgcgttatcccggtgcgttactg
gctcgctaccatcgcagcgacttcgccgtgctgctgccgcatcgcacattaaaggaagcg
gagagcatcgccgggcagatcctgaaagcggtggacgggttacccccgaataaaacgctg
acccgcgaagacattatgcacattggtatttgtgcctggcgtagcgggcaagctggtgtg
caagtcatggagcatgccgaagccgcagcgcgcaacgcggtgttacagggcggaaacagt
tggtcagtgtacgacgacacattaccggaacaagggcgtggaaatgtgcgctggcgaacg
ctgattgagcagatgctgagccgcggcgggccgcgcgtttatcagaaaccagcgattaac
cgggacggccaggttcatcaccgcgagctgatgtgccgcattttcgacggcgaacaagaa
gtgattgccgaagagtatatgcccatggtgcagcagtttggtctggctgaagagtatgac
cgcctgcaggtgacgcgtctgattccctttatgggtttttggccggaagaaaacctcgcc
atgcaaataaccgtggaatcattgatccgcccccgttttcaacgctggctacgcgatata
ttaatgcagtgcgaaaaatctcaacgtaaacggattatttttgaacttgctgaggcggat
gtttgtcaacatatcagccggttacagtcggtggtgcgtttaatcaacgcattaggcgcc
cgcgtagtggtcaatcaggcgggtctgacgttggtgagcaccagttggattaaagcgttg
gatgttgagctattaaagctgcatccggggctggtcaggaacattgaaaagcgcaccgaa
aaccagcttctggtgcagagcctcgtggaagcgtgcaaaggcacgcgaacgcgagttttc
gcaaccggcgttcgctctcgtggcgaatggcagacgctggtggaacggggtgttgcgggt
gggcagggcgatttcatcgcggcttcccaaccgctcgataccaatgtgaaaaaatattcg
caaagatactcggtttga
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