KEGG   Klebsiella pneumoniae subsp. pneumoniae ATCC 43816 KPPR1: VK055_3110
Entry
VK055_3110        CDS       T03418                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
kpt  Klebsiella pneumoniae subsp. pneumoniae ATCC 43816 KPPR1
Pathway
kpt03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:kpt00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    VK055_3110 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:kpt03021]
    VK055_3110 (rpoB)
   03400 DNA repair and recombination proteins [BR:kpt03400]
    VK055_3110 (rpoB)
Enzymes [BR:kpt01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     VK055_3110 (rpoB)
Transcription machinery [BR:kpt03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     VK055_3110 (rpoB)
DNA repair and recombination proteins [BR:kpt03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      VK055_3110 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_45 RNA_pol_Rpb2_7 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2
Other DBs
NCBI-ProteinID: AIK81691
LinkDB
Position
complement(3189502..3193530)
AA seq 1342 aa
MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ
SYSGNSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVVFEIRDNKLQME
LIPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDIKHIEVPVEYIAGKVAAKD
YIDEATGELICPANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETVRVDPTNDRL
SALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRDEIEGSGIL
SKDDIIEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMVQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTNGVVT
DEIHYLSAIEEGNYVIAQANSNLDENGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR
GGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPIERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL
SEELQILEAGLFSRIYAVLVSGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDE
LKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKIN
PIEDMPHDANGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAK
LREFIQRAYDLGADVRQKVDLNTFSDEEVLRLAENLRKGMPIATPVFDGAKEAEIKELLQ
LGDLPTSGQITLFDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP
ESFNVLLKEIRSLGINIELEDE
NT seq 4029 nt   +upstreamnt  +downstreamnt
atggtttactcctataccgagaaaaaacgtattcgtaaggattttggtaaacgtccacaa
gttctggatgtgccatatctcctttctatccagcttgactcgttccagaagtttatcgag
caagatcctgaagggcagtatggtctggaagctgctttccgttccgtattcccgattcag
agctacagcggtaattccgagctgcaatacgtcagctaccgtctgggcgaaccggttttt
gacgttaaagaatgtcagatccgtggcgtgacttattctgcaccgctgcgcgtaaaactg
cgtctggtgatctacgagcgcgaagcgccagaaggcaccgtcaaagacattaaagaacaa
gaagtctacatgggcgaaattccgctcatgaccgacaacggtacctttgttatcaacggt
accgagcgtgttatcgtttctcagctgcaccgtagcccgggcgtcttctttgacagtgac
aaaggtaagacccactcctccggtaaggttctgtataacgcacgtatcatcccttaccgc
ggttcctggctggacttcgaattcgacccgaaagacaacctgttcgttcgtatcgaccgt
cgtcgtaagctgccggctaccatcatcctgcgcgcgctgaattacaccactgagcagatc
cttgacttgttcttcgaaaaagtggtctttgaaattcgcgacaacaagctgcagatggag
ctgattccggagcgtctgcgcggtgaaactgcctccttcgatatcgaagccaacggcaaa
gtgtacgttgagaaaggccgtcgcatcacggctcgtcatatccgtcagctggaaaaagac
gatatcaagcatatcgaagtgccggttgaatatatcgcgggcaaagtggcggctaaagac
tatatcgatgaagcgactggcgaactgatctgcccggcgaacatggagttgagcctggat
ctgctggctaagctgagccagtctggccacaagcgtatcgaaacgctgttcaccaacgat
ctggaccacggcccgtacatctctgaaacggtacgcgtcgacccgactaacgatcgtctg
agcgcgctggtagaaatctaccgcatgatgcgccctggcgagccgccgactcgtgaagcc
gctgaaagtctgtttgagaacctgttcttctctgaagaccgctacgacctgtccgcggtt
ggtcgtatgaagttcaaccgttctctgctgcgcgacgaaatcgaaggttccggtatcctg
agcaaagacgacatcatcgaagtgatgaagaagctcatcgatatccgtaacggtaaaggc
gaagtggacgatatcgaccacctcggcaaccgtcgtatccgttccgttggcgaaatggcg
gaaaaccagttccgcgttggcctggtacgtgtagagcgtgcggtgaaagagcgtctgtct
cttggcgatctggataccctgatgcctcaggatatgatcaacgccaagccgatttccgca
gcagtgaaagagttctttggttccagccagctgtctcagtttatggtccagaacaacccg
ctgtctgagattacgcacaaacgtcgtatctccgcactcggcccaggcggtctgacccgt
gagcgcgcaggcttcgaagttcgagacgtacacccgacccactacggtcgcgtatgtccg
atcgaaacgcctgaaggtccgaacatcggtctgattaactccctgtccgtgtacgcgcag
accaacgaatatggcttccttgagacgccgtatcgtaaagtgaccaacggtgtggttact
gacgaaattcactacctgtctgctatcgaagaaggcaactacgttatcgctcaggcgaac
tccaacctggatgaaaacggccacttcgtagaagatctggttacctgccgtagcaaaggc
gaatccagcttgttcagccgcgaccaggttgactacatggacgtatccacccagcaggtg
gtatccgtcggtgcgtccctgatcccgttcctggaacacgatgacgccaaccgtgcattg
atgggtgcgaacatgcaacgtcaggcggttccgactctgcgcgctgataagccgctggtt
ggtaccggtatggaacgtgctgttgccgttgactccggtgttactgccgtggctaaacgt
ggcggtaccgttcagtacgtggatgcttcccgtatcgttatcaaagttaacgaagacgag
atgtacccgggcgaagcaggtatcgacatctataacctgaccaagtacacccgttctaac
cagaatacctgcatcaaccagatgccttgcgtgtccctgggcgaacctattgagcgcggc
gacgtgctggcagacggcccgtccaccgacctcggtgagctggcgctgggtcagaacatg
cgtgtagcgttcatgccgtggaacggttacaacttcgaagactccatcctcgtttccgag
cgtgttgtccaggaagaccgtttcaccactatccacattcaggaactggcgtgcgtgtcc
cgtgacaccaagctggggccggaagagatcaccgctgatatcccgaacgtgggtgaagct
gcgctctctaaactggatgagtccggtatcgtttatatcggtgcggaagtgaccggcggc
gacattctggttggtaaggtaacgccgaaaggtgaaacccagctgacgccggaagagaaa
ctgctgcgcgcgatcttcggtgagaaagcgtctgacgttaaagactcttctctgcgcgta
ccgaacggtgtctctggtaccgttatcgacgttcaggtctttacccgtgacggcgtagaa
aaagacaaacgtgctctggaaatcgaagagatgcagctgaagcaggccaaaaaagacctg
tctgaagaactgcagatcctcgaagccggtctgttcagtcgtatctacgcggtgctggtc
tccggtggcgttgaagctgagaagctcgacaagctgcctcgcgatcgctggctggaactg
ggcctgaccgacgaagagaaacaaaatcagctggaacagctggctgagcagtatgacgaa
ctgaaacacgagttcgagaaaaaactcgaagcgaaacgccgtaaaatcacccaaggcgac
gatctggcaccgggcgtgctgaagattgttaaggtatatctggccgttaaacgccgtatc
cagcctggtgataagatggcaggtcgtcacggtaacaagggtgttatctctaagatcaac
ccgatcgaagatatgccgcacgatgctaacggtacgccggtagatatcgtactgaacccg
ctgggcgtaccgtctcgtatgaacatcggtcagatccttgaaactcacctgggtatggct
gcaaaaggcatcggcgataagatcaacgccatgctgaaacagcagcaggaagtcgcgaaa
ctgcgcgaattcatccagcgtgcttacgatctgggcgctgacgttcgccagaaagttgac
ctgaataccttcagcgatgaagaagttctgcgtctggctgaaaacctgcgtaaaggcatg
ccgatcgcaacgccggtattcgacggtgcgaaagaagctgaaatcaaagagctgctgcag
ctgggcgacctgccgacttccggtcagatcaccctgtttgatggccgcaccggtgaacag
ttcgaacgtccggtaaccgtgggttacatgtacatgctgaaactgaaccacctggtcgac
gacaaaatgcacgctcgttccaccggttcttacagcctggttactcagcagccgctgggt
ggtaaggcacagttcggtggtcagcgcttcggtgagatggaagtgtgggcgctggaagca
tacggcgcggcctacactctgcaggaaatgctcaccgttaagtctgatgacgtgaacggt
cgtaccaagatgtataaaaacatcgtggacggcaatcaccagatggaaccgggcatgccg
gaatccttcaacgtactgttgaaagaaattcgctcgctgggcatcaacatcgaactggaa
gacgagtaa

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