Kitasatospora purpeofusca: ACFCLZ_13345
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Entry
ACFCLZ_13345 CDS
T11279
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
kpur Kitasatospora purpeofusca
Pathway
kpur03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kpur00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACFCLZ_13345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kpur03019
]
ACFCLZ_13345
03009 Ribosome biogenesis [BR:
kpur03009
]
ACFCLZ_13345
Enzymes [BR:
kpur01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ACFCLZ_13345
Messenger RNA biogenesis [BR:
kpur03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ACFCLZ_13345
Ribosome biogenesis [BR:
kpur03009
]
Prokaryotic type
rRNA processing factors
ACFCLZ_13345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Extensin_1
Motif
Other DBs
NCBI-ProteinID:
XHR66586
LinkDB
All DBs
Position
complement(3188269..3191898)
Genome browser
AA seq
1209 aa
AA seq
DB search
MLENTDPQQSAATEQNDTTAAGGDGASAAPPRRRRRAVSRPAGAPQGAAAEAAETVIAAE
AEVKPAETPAAEAPAAEPVAEKPVRARRTRKRAEAPAGAPEDTAILVTAPDAGETGVVAE
AGKAPKAAKAEKTEKADKAEAEAAEKAEKPVRARRTRKKAEAAPAEEPVQVVAEPAAEPA
AVEAPAEEAPAAPARRARRRRVVEATPVVETAPTAEEPAAEEPEAEEPAVEAPAAEQPAP
APAAEAEPPHRVRRRAVRPSTAIFQAPVFQEPASYVAPSAPAASAAPSASAASAASAAQA
APQPAAAEAPAVPGEDEEFEYSGVGRRRRVRTSVRVQTPARSRAAAAKAAVAKPAAAKPV
VEKPAVEKPAAAKPAVEEAPVEAPAVVEAPATGPEAEDEWEDGRPSRRRRRGGRRRRRGE
AEEAEGEGPETEQSTAEEPAVADEDDEDDDLAAGLSSSRRRRRRRRRSGETGAVETAETT
EDGVRTVVKVREPRRRSTEPSFDPDEVQSIKGSTRLEAKKQRRREGRELGRRRVPIITEA
EFLARRESVERVMVVRQNGQRTQIGVLEDGVLVEHYVNKEQATSYVGNVYLGKVQNVLPS
MEAAFVDIGKGRNAVLYAGEVNFGALGGHGGPRRIESVLKSGQSVLVQVSKDPIGHKGAR
LTSQISLPGRYLVYVPEGSMTGISRKLPENERARLKQILKKIVPDDAGVIVRTAAEGASE
EELTRDVQRLQQQWEDIQKKAASGNAPALLYGEPDMTVRVVRDIFNEDFTKVIVSGNEAW
NTIHDYVSNVAPDLAERLQRWTSEVDVFATYRIDEQLMKALDRKVWLPSGGSLVIDRTEA
MVVIDVNTGKFVGQGGNLEETVTRNNIEAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRD
LVLRRLLECLGRDRTKHQVAEVTSLGLVQMTRKRVGQGLLESFSEPCVHCNGRGVIVHME
QPSAHAHTGGGAAAVEAGSGGGKRRRRGKGGAAHEEAQAVEAVEPLEAVEAVVEAAEAPV
REEIEGQLAIEVPGVEEPPAEAAVVEAPVEPAPAAAPTGRPRRRAVRKATAPAGAPGEAE
IVVLQAKAEAALESALAAVSPAAQAEGGQQPVEAVVAEAVAEPVAVEAEAPAEPVTEAPV
EPAAAEEPAEEAPAPKKRAARKTAAKKTTAAKKTTAAAAKKTTARKTATKRTSAAAKKAA
AAEGDTAAE
NT seq
3630 nt
NT seq
+upstream
nt +downstream
nt
atgctcgagaacaccgatccgcagcagtctgcggcaacggaacagaacgacaccaccgcc
gccggcggcgacggcgcgtccgccgcgccgccgcgccggcgccgccgggcggtgtcccgt
ccggccggagcgccgcagggcgcggccgcggaggccgccgagacggtcatcgcggccgag
gccgaggtgaagccggccgagacgccggccgccgaggcgcccgcggccgagccggtcgcg
gagaagccggtgcgcgcccgccggacccgcaagcgcgccgaggcgcccgccggtgcgccc
gaggacaccgccatcctggtcaccgcgccggacgccggtgagacgggggtcgtggccgag
gccggcaaggctccgaaggccgcgaaggcggagaagaccgagaaggcggacaaggccgag
gccgaggccgccgagaaggcggagaagcccgtgcgggcccgccggacccgcaagaaggcg
gaggccgcgccggccgaggagccggtgcaggtcgtcgccgagcccgccgccgagccggcc
gctgtcgaggcgcccgccgaggaggccccggccgccccggcgcgccgtgcccgccgccgc
cgggtggtcgaggccaccccggtggtcgagaccgcgcccaccgccgaggagccggcggcc
gaggagcccgaggccgaggagcccgccgtcgaggcgcccgccgccgagcagcccgcgccc
gcgccggccgccgaggccgagccgccgcaccgggtgcgccgccgcgcggtccgcccgtcc
accgcgatcttccaggcgccggtcttccaggagcccgcctcctacgtcgccccgagcgcc
cctgccgcttcggctgctccgtccgcttcggccgcgtcggccgcgtcggccgcgcaggcc
gccccgcagccggccgccgccgaggcgccggccgtgccgggggaggacgaggagttcgag
tacagcggcgtcggccgccgtcgccgcgtccgtacctcggtgcgggtgcagaccccggcg
cgctcgcgggccgctgccgcgaaggcggccgtcgcgaagcccgctgccgcgaagccggtg
gtcgagaagccggcggtcgagaagcccgccgccgcgaagcccgccgtcgaggaggcgccc
gtcgaggcgcccgccgtcgtcgaggcccccgccaccggccccgaggccgaggacgagtgg
gaggacggccgcccgtcgcgccgtcgccgccggggcggccgccgccgccgtcgcggtgag
gccgaggaggccgagggcgaggggcccgagaccgagcagtccaccgccgaggagccggcc
gtcgccgacgaggacgacgaggacgacgacctggccgccggcctgtcctcgtcccgccgc
cgtcgccgccgtcgccgccgcagcggtgagaccggcgccgtcgagactgccgagaccacc
gaggacggcgtccgcacggtggtgaaggtgcgcgagccgcgccgccgctccaccgagccg
tccttcgacccggacgaggtgcagtccatcaagggctccacccgcctggaggccaagaag
cagcgccgccgcgagggccgcgagctgggccgccgccgggtgccgatcatcaccgaggcc
gagttcctggcccgccgggagtcggtcgagcgcgtcatggtggtgcgccagaacggccag
cgcacccagatcggcgtcctggaggacggcgtgctcgtcgagcactacgtcaacaaggag
caggccacctcgtacgtcggcaacgtctacctgggcaaggtccagaacgtgctgccgtcc
atggaggccgccttcgtcgacatcggcaagggccgcaacgcggtgctgtacgccggcgag
gtcaacttcggcgcgctcggcggccacggcggcccgcgccggatcgagtccgtgctgaag
tccggccagtccgtgctggtgcaggtctccaaggacccgatcggccacaagggcgcccgc
ctgaccagccagatctcgctgcccggccgctacctggtctacgtgcccgagggctcgatg
accggcatctcccgcaagctgccggagaacgagcgcgcccgtctgaagcagatcctcaag
aagatcgtcccggacgacgcgggcgtcatcgtgcgcaccgccgccgagggcgcctccgag
gaggagctgacccgcgacgtccagcggctgcagcagcagtgggaggacatccagaagaag
gccgcgtccggcaacgccccggcgctgctgtacggcgagccggacatgaccgtccgggtc
gtccgcgacatcttcaacgaggacttcaccaaggtcatcgtctccggcaacgaggcgtgg
aacaccatccacgactacgtctccaacgtggccccggacctcgcggagcggctccagcgg
tggacctccgaggtggacgtcttcgccacctaccggatcgacgagcagctgatgaaggcg
ctggaccgcaaggtctggctgcccagcggcggttcgctggtgatcgaccgcaccgaggcg
atggtcgtcatcgacgtcaacaccgggaagttcgtcggccagggcggcaacctggaggag
acggtcacccgcaacaacatcgaggcggccgaggagatcgtgcgccagctgcggctgcgc
gacctcggcggcatcatcgtgatcgacttcatcgacatggtcctggagtccaaccgcgac
ctggtgctgcgccgcctgctggagtgcctgggccgggaccggaccaagcaccaggtggcc
gaggtcacctcgctgggcctggtgcagatgacccgcaagcgggtcggccagggtctgctg
gagtccttctccgagccctgcgtgcactgcaacggccgcggtgtgatcgtccacatggag
cagccgagcgcccacgcgcacaccggtggcggcgcggccgccgtcgaggcgggctcgggc
ggcggcaagcgccggcgccggggcaagggcggcgcggcgcacgaggaggcgcaggccgtc
gaggcagtcgagccgctggaggccgtcgaggcggtcgtcgaggccgccgaggcgccggtc
cgcgaggagatcgagggccagctggcgatcgaggtgccgggcgtcgaggagccgccggcc
gaggccgcggtcgtcgaggccccggtcgagccggcgcccgccgccgcgcccaccgggcgg
ccccgccgccgggcggtgcgcaaggccacggccccggccggcgcgccgggcgaggcggag
atcgtggtgctgcaggccaaggccgaggcggcgctggagtcggccctcgcggccgtcagc
ccggccgcgcaggccgagggcgggcagcagccggtcgaggcggtcgtcgccgaggcggtg
gccgagccggtcgccgtcgaggccgaggcccccgccgagccggtcaccgaggcccccgtc
gagccggccgcggccgaggagcccgccgaggaggcgccggcgccgaagaagcgggcggcc
cgcaagaccgccgccaagaagaccaccgccgccaagaagacgacggcggcggcggcgaag
aagaccaccgcccgcaagaccgccaccaagcggacgagcgcggcggccaagaaggcggcg
gccgccgagggtgatacggcggccgagtag
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