Klebsiella quasivariicola: B8P98_26400
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Entry
B8P98_26400 CDS
T05116
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
kqv
Klebsiella quasivariicola
Pathway
kqv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
kqv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
B8P98_26400 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kqv03021
]
B8P98_26400 (rpoB)
03400 DNA repair and recombination proteins [BR:
kqv03400
]
B8P98_26400 (rpoB)
Enzymes [BR:
kqv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
B8P98_26400 (rpoB)
Transcription machinery [BR:
kqv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
B8P98_26400 (rpoB)
DNA repair and recombination proteins [BR:
kqv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
B8P98_26400 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
ASV22565
UniProt:
A0A223UHS8
LinkDB
All DBs
Position
complement(5258822..5262850)
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ
SYSGNSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVVFEIRDNKLQME
LIPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDIKHIEVPVEYIAGKVAAKD
YIDEATGELICPANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETVRVDPTNDRL
SALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRDEIEGSGIL
SKDDIIEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVT
DEIHYLSAIEEGNYVIAQANSNLDDEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR
GGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPIERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL
SEELQILEAGLFSRIYAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDE
LKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKIN
PIEDMPHDANGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAK
LREFIQRAYDLGADVRQKVDLNTFSDEEVLRLAENLRKGMPIATPVFDGAKEAEIKALLQ
LGDLPTSGQITLFDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP
ESFNVLLKEIRSLGINIELEDE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaaaaaacgtattcgtaaggattttggtaaacgtccacaa
gttctggatgttccatatctcctttctatccagcttgactcgttccagaagtttatcgag
caagatcctgaagggcagtatggtctggaagctgctttccgttccgtattcccgattcag
agctacagcggtaattccgagctgcaatacgtcagctaccgtctgggcgaaccggttttt
gatgttaaagaatgtcagatccgtggcgtgacttattctgcaccgctgcgtgtaaaactg
cgtctggtgatctacgagcgtgaagcgccggaaggcaccgtcaaagacatcaaagaacaa
gaagtctacatgggcgaaatcccgctcatgaccgacaacggtacctttgtcatcaacggt
accgagcgtgttatcgtttctcagctgcaccgtagcccgggcgtcttctttgacagtgac
aaaggtaagacccactcttccggtaaggtcctgtataacgcacgtatcattccttaccgc
ggttcctggctggacttcgaattcgacccgaaagacaacctgttcgttcgtatcgaccgt
cgtcgtaagctgccggctaccatcatcctgcgcgcgctgaattacaccactgagcagatc
cttgacctgttcttcgaaaaagtggtctttgaaattcgcgacaacaagctgcagatggag
ctgattccggagcgtctgcgcggtgaaaccgcctccttcgatatcgaagccaacggtaaa
gtgtacgttgagaaaggtcgtcgcatcacggcgcgtcacatccgtcagctggaaaaagac
gatatcaagcatatcgaagtgccggttgaatacatcgcgggcaaagtggcggctaaagac
tatatcgatgaagcgactggcgaactgatctgcccggcgaacatggagctgagcctggat
ctgctggctaagctgagccagtctggccacaagcgtatcgaaacgctgttcaccaacgat
ctggaccacggcccgtacatctctgaaacggtacgcgtcgacccgactaacgatcgtctg
agcgcgctggtagaaatctaccgtatgatgcgccctggtgagccgccgactcgtgaagcc
gctgaaagtctgttcgagaacctgttcttctccgaagaccgctacgatctgtccgcggtt
ggtcgtatgaagttcaaccgttcgctgctgcgtgacgaaattgaaggttccggtatcctg
agcaaagacgacatcatcgaagtgatgaagaagctcatcgatatccgtaacggtaaaggc
gaagtcgatgatatcgaccacctcggcaaccgtcgtatccgttccgttggtgaaatggcg
gaaaaccagttccgcgttggcctggtgcgtgtagagcgtgcggtgaaagagcgtctgtct
ctgggcgatctggataccctgatgcctcaggatatgatcaacgccaagccgatttccgca
gcagtgaaagagttctttggttccagccagctgtcccagtttatggaccagaacaacccg
ctgtctgagattacgcacaaacgtcgtatctccgcactcggcccaggcggtctgacccgt
gaacgcgcaggcttcgaagttcgagacgtacacccgactcactatggtcgcgtatgtcca
atcgaaacgcctgaaggtccgaacatcggtctgatcaactccctgtccgtgtacgcacag
actaacgaatacggtttccttgagaccccgtatcgtaaagtgaccgacggtgttgttacc
gacgaaattcattacctgtctgctatcgaagaaggtaactacgtcatcgctcaggcgaac
tccaacctggatgacgaaggccactttgttgaagatctggttacctgccgtagtaaaggc
gaatccagcttgttcagccgcgaccaggttgactacatggacgtatccacccagcaggtg
gtatccgtcggtgcgtccctgatcccgttcctggaacacgatgacgccaaccgtgcattg
atgggtgcgaacatgcaacgtcaggcggttccgactctgcgcgctgataagccgctggtt
ggtaccggtatggaacgtgctgttgccgttgactccggtgttactgcggtggctaaacgt
ggcggtaccgttcagtacgtggatgcttcccgtatcgttatcaaagttaacgaagacgag
atgtacccgggcgaagcaggtatcgacatctataacctgaccaagtacacccgttctaac
cagaacacctgcatcaaccagatgccttgcgtgtccctgggcgaacccattgaacgcggc
gacgtcctggccgacggcccgtccaccgacctcggtgaactggcgctgggtcagaacatg
cgcgtagcgttcatgccgtggaacggctacaacttcgaagactccatcctcgtatccgag
cgtgtggtccaggaagaccgtttcaccaccatccacattcaggaactggcatgcgtgtcc
cgtgacaccaagctggggccggaagagatcaccgctgatatcccgaacgtgggtgaagct
gcgctctccaaactggatgaatccggtatcgtttatatcggtgcggaagtgaccggcggc
gacattctggttggtaaggtaaccccgaaaggcgagacccagctgacgccggaagagaaa
ctgctgcgcgcgatcttcggtgagaaagcgtctgacgttaaagactcttctctgcgcgta
ccgaacggtgtctctggtaccgttatcgacgttcaggtgtttacccgtgacggcgtagaa
aaagacaagcgtgctcttgagatcgaagagatgcagctgaagcaggctaaaaaagacctg
tctgaagaactgcagatcctcgaagctggtctgttcagccgtatctatgccgtgctggtt
gccggtggcgttgaagctgagaagctcgacaaactgccgcgcgatcgctggctggaactg
ggcctgaccgacgaagagaaacaaaatcagctggaacagctggctgagcagtacgacgaa
ctgaaacacgagttcgagaaaaaactcgaagcgaaacgccgtaaaatcacccaaggcgac
gatctggcaccgggcgtgctgaagattgttaaggtatacctggccgttaaacgccgtatc
cagcctggtgacaagatggcaggtcgtcacggtaacaagggtgttatctctaagatcaac
ccgatcgaagatatgccgcacgatgctaacggtacgccggtagatatcgtactgaacccg
ctgggcgtaccgtctcgtatgaacatcggtcagatcctggaaactcacctgggtatggct
gcgaaaggcatcggcgataagatcaacgccatgctgaaacagcagcaggaagtcgcgaaa
ctgcgcgagttcatccagcgtgcctacgatctgggtgctgacgttcgtcagaaagttgac
ctgaataccttcagcgatgaagaagttctgcgtctggctgaaaacctgcgtaaaggtatg
ccgatcgcaacgccggtgttcgacggtgcgaaagaagcggaaattaaagcgctgctgcag
ctgggcgacctgccgacttccggtcagatcaccctgtttgacggccgcaccggtgagcag
ttcgagcgtccggtaaccgtgggttacatgtacatgctgaaactgaaccacctggtcgac
gacaaaatgcacgcgcgttccaccggttcttacagcctggttactcagcagccgctgggt
ggtaaggcgcagttcggtggtcagcgcttcggtgagatggaagtgtgggcgctggaagca
tacggcgcggcctacaccctgcaggaaatgctcaccgttaagtctgatgacgtgaacggt
cgtaccaagatgtataaaaacatcgtggacggcaatcaccagatggaaccgggcatgccg
gaatccttcaacgtactgttgaaagaaattcgctcgctgggcatcaacatcgaactggaa
gacgagtaa
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