Ketogulonicigenium robustum: BVG79_00836
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Entry
BVG79_00836 CDS
T04841
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
kro
Ketogulonicigenium robustum
Pathway
kro03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
kro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BVG79_00836 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kro03400
]
BVG79_00836 (mfd)
Enzymes [BR:
kro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BVG79_00836 (mfd)
DNA repair and recombination proteins [BR:
kro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BVG79_00836 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
MFD_D3
AAA_16
AAA_30
SecA_DEAD
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ARO14188
UniProt:
A0A1W6NY67
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All DBs
Position
820354..823812
Genome browser
AA seq
1152 aa
AA seq
DB search
MSHDPKHITVSGAPEGFDARLILQEVAKSAAPVVHVARDDRRLAAMQAALAFFDPSMPVF
TFPAWDCLPYDRISPNPEISAARMATLAALIHGMPQRYVLLTTLNAATQKVPARDLLRKS
AFSVDVGARVDEGALRGFLTRMGFSPAATVTEPGDFAWRGGIVDIFPPGQDLPVRLDFFG
DVLDGARLFDPANQRTVEKLSRVELSPVSEVVLDEASITRFRQNYRVAFGAGGADDPLYE
SVTAGRKQAGMEHWLGFFHDRLETLFDFLPDATITLDDQSDAIREARWVSIVDQYEARQH
ALQQRRGSDSVYKPAPPDSLYLDESAWVTAVGGRRMLRLAPLKQPVGLGVIDAGGVIGRN
FAPERQQENINLFSALSDYIKPISKDHPVILASYSEGARERLTGLLEDEGVGEVIPVTDF
SRVGKRGVHMAVWPLEAGFTAPGLTVISEQDVLGERLIRQTRRKRRAENFLTEANSLSPG
DLVVHVEHGVGRYLGLEVITAAGAPYECLALEYAEGAKLYLPVVNIELLSRYGHEQGLLD
KLGGGAWQSKKAKLKERIRQIADRLIRVAAERALRSAPEVDPPAEIWEQFLARFPYQETD
DQLQAITDVLEDLQSGRPMDRLICGDVGFGKTEVAIRAAFVAAMSGMQVAVVAPTTLLAR
QHFKSFAERFRGFPLNVRPLSRFVSAKDAEATRKGLADGTVDVVIGTHAVLAKAVKFKSL
GLLIIDEEQHFGVQHKERLKQLRSDIHVLTLTATPIPRTLQLSLSGVRDLSIIGTPPIDR
LAIRTYVSEFDTITVREALLREHFRGGQSFIVVPRLSDLPEMEEFLQREVPEVKYVAAHG
QMAAGELDDRMNAFYDGKFDVLLATTIVESGLDIPTANTMIVHRADMFGLSQLYQIRGRV
GRSKVRAYAYLTTKPRQKLTPAAEKRLRVLGSLDSLGAGFQLASQDLDIRGAGNLLGEEQ
SGQIREVGYELYQQMLEDEIARIKSGESEALPDNDQWAPNISIGVSVLIPEDYVPDLDVR
LGLYRRLSDLTTKVELEGFAAELIDRFGKLPREVNTLLTVVRIKAMCKRAGISSLEAGPK
GVTIRFHNDKFASPAGLVAFLHDQNGAAKVKDNRIVILADWKTEADRIRGSFAIARDLAE
KLAAEKKAAKTA
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atgtcccacgatccaaagcatattacagtctctggcgcgcccgaggggttcgacgcccgc
cttatcctgcaagaagtcgcgaagtccgccgcgccggtggtgcacgtcgcacgcgacgac
cgccgcttggccgcgatgcaggccgcgctggcgttttttgacccttccatgccggtgttt
acatttcctgcgtgggattgcttgccctatgaccgtatctcgcccaaccccgagatttcg
gccgcgcgcatggcgacgctggcggcgctgatacacggcatgccgcagcgctatgtgctg
ctgaccacgctgaatgcggcaacgcaaaaggtgcccgcgcgcgatttgctgcgcaagtcg
gcgttttctgtcgatgtcggcgcgcgcgtggacgagggggccttgcgcggttttctgacc
cgcatgggctttagccccgcggccaccgtgaccgagccgggcgatttcgcgtggcgcggc
ggcatcgtcgacattttcccgcccgggcaagatttgccggtgcggctggatttctttggc
gacgtgctggatggcgcgcgcctgttcgaccccgcaaaccagcgcacggttgaaaagctg
tcgcgggtcgaactgtcgccggtgtccgaggtggtgctggacgaggcttcgatcacgcgg
ttccggcagaattaccgcgtggctttcggggcgggcggggccgatgacccgctgtacgaa
agtgtcaccgcagggcgcaagcaggcggggatggagcactggctgggcttcttccacgat
aggctggaaaccctgttcgactttctacccgatgcgacgatcacgctggacgaccaaagc
gatgcgatccgcgaggcgcgctgggtctcgattgtcgaccaatacgaggcgcgacagcac
gcgctgcagcagcgccgcggcagtgacagcgtctacaaacccgcgccgccagacagccta
tatctggatgagagcgcttgggtgacggccgtgggtggccgccgtatgttgcgccttgcg
ccgctaaagcagcctgtgggccttggcgtgatcgacgcaggcggggtcataggccgcaac
tttgcgcctgagcgtcagcaggaaaatataaacctgttcagtgcattatcggactatatt
aaacctatatctaaagatcaccccgtgatccttgccagctactccgagggcgcgcgcgag
cgtttaacagggttgctggaagacgaaggcgtgggcgaggttattcccgtcaccgacttt
agccgcgttggcaagcgcggcgtgcacatggccgtctggccgctggaggctggctttacc
gcccccggcctgaccgtcatttccgaacaagacgtgctgggcgaacggctgatccgccag
acccgccgtaagcgccgcgccgaaaacttcctgaccgaggcgaacagcctgtcgcccggc
gatctggtcgtccacgtcgaacacggcgtgggccgctatctggggctagaggtgatcacc
gccgccggcgcgccctatgaatgcctcgcgctggaatatgccgaaggcgcgaagctgtac
ctgccggtggtcaatatagaactgctcagccggtatgggcacgaacagggcctgctggac
aaactgggcggcggggcatggcagtcgaaaaaggccaagctgaaagaacgaatccgccag
atcgccgaccggctgatccgcgtggccgccgaacgcgcgttgcggtccgcccccgaggtc
gacccgcccgccgagatttgggaacagttcttggcgcggttcccctatcaggagaccgac
gaccagttgcaggccatcaccgatgtgctggaggatttgcagtccggccgcccgatggac
cgcctgatctgcggcgacgtgggctttggcaagaccgaggtggcgatccgcgccgcgttc
gttgccgcgatgtcgggcatgcaggtggccgtcgttgcgcccacaacactgctggcgcgc
cagcatttcaaaagcttcgccgaacgcttccgtgggttcccgctgaatgttcgcccgttg
tcgcgcttcgtctcggccaaagatgccgaagcgacgcgtaaggggttggctgatggcacg
gttgatgtcgtcatcggcacccatgcggtgctggccaaagcggtgaaattcaaaagcctc
gggctgttgattatcgacgaggaacagcatttcggcgtgcagcataaggagcggctgaaa
cagttgcggtccgacatccacgtgctgacgctgaccgcaacgcccattccgcgcacgctg
cagctgtcgctttcgggggtgcgcgacctgtcgatcatcggcacgccgcccatcgaccgg
ctggcgatccgcacctatgtcagcgaattcgacacgatcaccgtgcgcgaggcactgctg
cgcgagcacttccgtggcggccaaagcttcatcgtcgtgccgcgcctaagcgatttaccc
gagatggaagaattcctgcagcgcgaagtgcccgaggtgaaatacgtcgccgcccatggc
cagatggctgcgggcgagttggacgaccggatgaacgccttctacgatggcaagttcgac
gtgctgctggcgacgacgattgtggaatcgggcttggacattccgaccgccaacacgatg
atcgtgcaccgcgcggatatgttcggcctgtcgcaactctatcaaattcgtgggcgggtt
ggccggtcgaaggtgcgggcctatgcctatctgacgacgaagccgcgccagaaactgacc
cctgccgcagaaaaacgcctgcgcgtgctgggcagtttggacagccttggggcagggttt
caactggcctcgcaggatttggatattcgcggcgcgggtaatctgctgggcgaggaacaa
tccggccagatccgcgaggtcggctacgagctgtaccagcagatgctggaggacgagatc
gcgcgcatcaaatcgggcgaatccgaggctctgcccgacaacgaccaatgggcgccgaac
atcagcattggcgtgtccgtactgatccccgaggattacgtgcccgatctggacgtgcgc
cttggcctgtaccgccggctatccgacctgaccaccaaagtcgagctggaaggcttcgcc
gccgagctgatcgaccgtttcggcaagctgccgcgcgaggtgaacaccctgctgacggtc
gtgcggatcaaggccatgtgtaaacgggccggaatctccagcctcgaggcggggccgaag
ggcgtcacgatccgcttccacaacgacaaattcgcgtcgcctgcggggctggtcgcgttc
ttgcacgaccaaaacggcgcggccaaggtgaaagacaatcgcattgtcattctggccgac
tggaaaaccgaagctgaccggatcaggggctctttcgcaattgcccgagatctggcagaa
aagctggccgccgagaaaaaggctgccaaaaccgcttag
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