KEGG   Kwoniella shivajii: 87954949
Entry
87954949          CDS       T10982                                 
Symbol
IL334_002818
Name
(RefSeq) uncharacterized protein
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
ksh  Kwoniella shivajii
Pathway
ksh03018  RNA degradation
ksh03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ksh00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    87954949 (IL334_002818)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    87954949 (IL334_002818)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ksh03019]
    87954949 (IL334_002818)
   03041 Spliceosome [BR:ksh03041]
    87954949 (IL334_002818)
Messenger RNA biogenesis [BR:ksh03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     87954949 (IL334_002818)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     87954949 (IL334_002818)
Spliceosome [BR:ksh03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    87954949 (IL334_002818)
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 87954949
NCBI-ProteinID: XP_062790607
LinkDB
Position
3:complement(join(1701423..1701565,1701632..1701667,1701745..1701841,1701967..1702116,1702196..1702237,1702293..1702295))
AA seq 156 aa
MLPLSLLNAAQGKPMLVELKNGVTFNGHLVECDNFMNVTLREVYQTSADGERFWKMKEMF
IKGNIIKYFRIADSILDTAMEEQEKQRAANRQRGGGRGGRGGGQQNVRGGRGGQSGRGGP
PGRGGGPGGGRGGPGGRGGRGGGGGGGQRGGRGGAQ
NT seq 471 nt   +upstreamnt  +downstreamnt
atgctacccctttcattactaaatgccgctcaaggcaaaccaatgctcgtagaactgaag
aatggcgtgacgtttaatggtcatctggtggaatgtgataatttcatgaatgtaactttg
agagaggtgtatcaaacatcagcagacggagaaaggttttggaagatgaaggagatgttc
ataaaaggtaacataattaaatactttcgtatagcggattcgatccttgatacagctatg
gaagaacaagagaaacaaagagctgctaatagacaacgtggtggtggaagaggtggaaga
ggaggtggtcaacaaaatgtacgaggaggccgagggggacaatccggtcgtggaggtcca
ccaggaagaggtggtggtccaggtggcggaagaggaggtccaggtggaagaggaggaaga
ggtggcggtggcggtggtggtcaacggggtggtaggggtggagcacaatga

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