Kitasatospora setae: KSE_32000
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Entry
KSE_32000 CDS
T01648
Symbol
rpoB
Name
(GenBank) putative DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ksk
Kitasatospora setae
Pathway
ksk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ksk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KSE_32000 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ksk03021
]
KSE_32000 (rpoB)
03400 DNA repair and recombination proteins [BR:
ksk03400
]
KSE_32000 (rpoB)
Enzymes [BR:
ksk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KSE_32000 (rpoB)
Transcription machinery [BR:
ksk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KSE_32000 (rpoB)
DNA repair and recombination proteins [BR:
ksk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KSE_32000 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
BAJ29010
UniProt:
E4NCS9
LinkDB
All DBs
Position
complement(3599201..3602674)
Genome browser
AA seq
1157 aa
AA seq
DB search
MAAPRNASNNSASTAPLRVSFAKIKEPLEVPNLLALQTESFDWLLGNAAWKSRVEAALES
GQDVPTKSGLEEIFEEISPIEDFSGSMSLTFRDHRFEPPKNSIDECKDRDFTFAAPLFVT
AEFTNNETGEIKSQTVFMGDFPLMTNKGTFIINGTERVVVSQLVRSPGVYFDSTLDKVSD
KDIFSAKIIPSRGAWLEMEIDKRDMVGVRIDRKRKQSVTVLLKALGWTTEMILEEFGEYE
SMRATLEKDHTQGQDDALLDIYRKLRPGEPPTREAAQTLLENLYFNPKRYDLAKVGRYKV
NRKLGNAESLDSGVLTEPDIINTIKYLVKLHAGETEWRDDEGRDIVIEVDDIDHFGNRRL
RNVGELIQNQVRTGLARMERVVRERMTTQDVEAITPQTLINIRPVVASIKEFFGTSQLSQ
FMDQTNPLSGLTHKRRLSALGPGGLSRERAGFEVRDVHPSHYGRMCPIETPEGPNIGLIG
SLASYGRVNAFGFIETPYRKVVDGVVTESVDYLTADEEDRYVIAQANAPLTAELTFAEPR
VLVRRRGGEIDYIPGTEIDYMDVSPRQMVSVATAMIPFLEHDDANRALMGSNMMRQAVPL
LRSEAPLVGTGMEYRCAVDAADVITADKAGVVQEVSADYVTVANDDGTYNTYRAAKFTRS
NQGTAFNQKVLVDEGQRVEVNQVLADGPCTDEGEMALGKNLLVAFMSWEGHNYEDAIILS
QRLVQDDVLSSIHIEEHEVDARDTKLGPEEITRDIPNVSEEVLADLDERGIIRIGADVVT
GDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGVRVFDREEG
DELPPGVNQLVRVYVAQKRKITNGDKLAGRHGNKGVISKILPVEDMPFLEDGTPVDIILN
PLGVPSRMNPGQVLEIHLGWLAMQGWDVSGLADEWAQRLQAIGADTVEGGTNLATPVFDG
AREDEITGLLDNTTLTRDGERLVNSTGKARLFDGRSGEPFPMPVSVGYMYILKLHHLVDD
KLHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYALQELLTIKSDDVLGR
VKVYEAIVKGENIPEPGIPESFKVLIKEMQSLCLNVEVLSSDGQSIEMRDSDEDVFRAAE
ELGIDLSRREPSSVEEV
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
ttggccgcgccgcgcaacgcctcgaacaattccgcatccaccgccccgctccgcgtctcg
ttcgcgaagatcaaggagcccctcgaggtcccgaacctcctggccctgcagaccgagagc
tttgactggctgctcgggaacgcggcctggaagtcccgggtcgaggctgccctggagagc
ggtcaggacgtccccaccaagtccggtctggaggagatcttcgaagagatctccccgatc
gaggacttcagcgggtcgatgtccctgaccttccgggaccaccgtttcgagccgccgaag
aactccatcgacgagtgcaaggaccgcgacttcaccttcgcggccccgctcttcgtcacc
gcggagttcaccaacaacgagaccggtgagatcaagtcccagaccgtgttcatgggcgac
ttcccgctcatgaccaacaagggcacgttcatcatcaacggcaccgagcgtgtcgtcgtg
tcccagctggtgcgttctcccggcgtctacttcgactccaccctggacaaggtctccgac
aaggacatcttctccgccaagatcatcccctcccgcggtgcctggctggagatggagatc
gacaagcgcgacatggtcggtgtccgcatcgaccgcaagcgcaagcagtcggtcaccgtg
ctcctcaaggccctcggctggaccaccgagatgatcctggaggagttcggcgagtacgag
tcgatgcgcgccaccctggagaaggaccacacccagggccaggacgacgcgctgctcgac
atctaccgcaagctgcgcccgggcgagccgccgacccgcgaggccgcgcagacgctgttg
gagaacctgtacttcaacccgaagcgctacgacctcgccaaggtcggccggtacaaggtg
aaccgcaagctgggcaacgccgagtcgctcgactccggcgtgctcaccgagccggacatc
atcaacaccatcaagtacctggtcaagctgcacgccggcgagaccgagtggcgcgatgac
gagggccgcgacatcgtcatcgaggtcgacgacatcgaccacttcggcaaccgccgcctg
cgcaacgtcggcgagctcatccagaaccaggtccgcaccggcctggcccggatggagcgc
gtcgtccgcgagcggatgaccacccaggacgtcgaggcgatcacgccgcagaccctgatc
aacatccggccggtcgtcgcctccatcaaggagttcttcggcaccagccagctgtcgcag
ttcatggaccagacgaacccgctgtcgggcctgacccacaagcgccgtctgtccgcgctc
ggccccggtggtctgtcccgcgagcgggccggcttcgaggtccgtgacgtgcacccctcg
cactacggccggatgtgtccgatcgagacccccgaaggcccgaacatcggtctgatcggc
tcgctggcctcgtacggccgggtcaacgcgttcggcttcatcgagaccccgtaccgcaag
gtcgtcgacggcgtggtcaccgagtcggtggactacctgaccgccgacgaggaggaccgc
tacgtcatcgcgcaggccaacgccccgctcaccgcggagctgaccttcgccgagccccgc
gtcctggtccgccgccgcggcggcgagatcgactacatccccggcaccgagatcgactac
atggacgtctcgccgcgccagatggtgtcggtcgcgaccgccatgatccccttcctcgag
cacgacgacgccaaccgcgcgctgatgggctcgaacatgatgcgccaggccgtcccgctg
ctgcgcagcgaggcgccgctggtcggcaccggcatggagtaccgctgcgccgtcgacgcc
gcggacgtcatcaccgccgacaaggccggcgtggtgcaggaggtctcggccgactacgtc
accgtcgccaacgacgacggcacgtacaacacctaccgggccgccaagttcacccgctcc
aaccagggcaccgccttcaaccagaaggtgctcgtggacgagggccagcgggtcgaggtc
aaccaggtgctggccgacggcccgtgcaccgacgagggcgagatggccctcggcaagaac
ctcctcgtggcgttcatgtcgtgggagggccacaactacgaggacgcgatcatcctgtcg
cagcgcctcgtccaggacgacgtcctctcctcgatccacatcgaggagcacgaggtcgac
gcccgtgacaccaagctgggccccgaggagatcacccgggacatcccgaacgtctccgag
gaggtcctcgccgacctcgacgagcgcggcatcatccggatcggcgccgacgtcgtcacc
ggcgacatcctggtcggcaaggtcaccccgaagggcgagaccgagctgaccccggaggag
cgcctgctccgcgcgatcttcggcgagaaggcgcgcgaggtccgcgacacctcgctgaag
gtgccgcacggcgagtccggcaaggtcatcggcgtccgcgtcttcgaccgcgaggagggg
gacgagcttcccccgggcgtgaaccagctggtccgcgtctacgtcgcgcagaagcgcaag
atcaccaacggtgacaagctggccggccgccacggcaacaagggcgtcatctccaagatc
ctgccggtcgaggacatgccgttcctggaggacggcaccccggtcgacatcatcctgaac
ccgctgggcgtcccgtcccggatgaacccgggacaggtcctggagatccacctcggctgg
ctcgccatgcagggctgggacgtctccggcctcgccgacgagtgggcccagcgcctccag
gcgatcggcgccgacacggtcgagggcggcaccaacctcgccaccccggtcttcgacggc
gcccgcgaggacgagatcaccggcctgctggacaacaccaccctcacccgtgacggtgag
cgcctggtgaactccaccggcaaggcccggctgttcgacggccgctccggcgagccgttc
ccgatgccggtctcggtcggctacatgtacatcctcaagctgcaccacctggtcgacgac
aagctgcacgcccgttcgaccggcccgtactcgatgatcacccagcagccgctcggtggt
aaggcgcagttcggtggtcagcgcttcggtgagatggaggtgtgggccctcgaggcgtac
ggcgcggcctacgcgctgcaggagctgctcaccatcaagtccgacgacgtcctgggccgc
gtgaaggtctacgaggcgatcgtcaagggcgagaacatccccgagcccggcattcccgag
tccttcaaggtcctcatcaaggaaatgcagtcgctctgcctcaacgtggaggtgctgtcc
tcggacggccagtccatcgagatgcgcgacagcgacgaggacgtgttccgcgccgccgag
gagctcggcattgacctgtcccggcgcgagccgagcagcgtcgaagaggtctga
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