Klebsiella variicola DSM 15968: SP68_15710
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Entry
SP68_15710 CDS
T03641
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
kvq
Klebsiella variicola DSM 15968
Pathway
kvq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kvq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SP68_15710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kvq03019
]
SP68_15710
03400 DNA repair and recombination proteins [BR:
kvq03400
]
SP68_15710
Enzymes [BR:
kvq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SP68_15710
Messenger RNA biogenesis [BR:
kvq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SP68_15710
DNA repair and recombination proteins [BR:
kvq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SP68_15710
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
AJE90645
LinkDB
All DBs
Position
complement(5302582..5304408)
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AA seq
608 aa
AA seq
DB search
MAQAEVLNQESLAKQVLQETFGYQQFRPGQETIIETVLEGRDCLVVMPTGGGKSLCYQVP
ALVMGGLTVVVSPLISLMKDQVDQLLANGVAAACLNSTQSREQQQEVMAGCRSGQVRLLY
IAPERLMLDNFLEHLANWNLAMLAVDEAHCISQWGHDFRPEYAALGQLRQRMPQIPFMAL
TATADDTTRRDIVRLLGLNDPLIQVSSFDRPNIRYMLMEKFKPLDQLMRYVQDQRGKSGI
IYCNSRSKVEDTAARLQSRGISAAAYHAGLENAVRADVQEKFQRDDLQIVVATVAFGMGI
NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPAGPL
QDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQEPCGNCDICLDPPKQYDGLMDARKAL
STIYRVNQRFGMGYVVEVLRGANNQRIRDMGHDKLPVYGIGREQSHEHWVSVIRQLIHLG
LVTQNIAQHSALQLTEAARPVLRGEVPLQLAVPRIVALKPKAMQKSFGGNYDRKLFAKLR
KLRKAIADEENIPPYVVFNDATLIEMAEQSPLTAGEMLSVNGVGTRKLERFGKEFMALIR
AHVDGDDE
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
gtggcacaggcggaagtattaaatcaggaatcgctggcgaagcaggttttacaagagacc
ttcggctaccagcagttccgtcctggccaggaaacgattatcgagacggtgcttgagggc
cgggactgcctggtggtcatgccgaccggtggcggcaagtcgctgtgctatcaggtgccg
gcgctggtcatgggcggtctgacagtcgtggtctcacccctgatctcgctgatgaaagac
caggtcgatcaactgctggccaacggcgtggcggcggcttgtctgaactcgacgcaaagc
cgcgagcagcagcaggaagtgatggccggctgtcgcagcgggcaggttcgtctgctgtat
atcgcgccggaacggttgatgctggataactttcttgagcatctggcgaactggaacctg
gcgatgctggcggtagacgaagcgcactgtatctcccagtggggccatgacttccgtccg
gaatatgccgcgctgggccagctgcgccagcggatgccgcagatcccgtttatggcgttg
accgccaccgccgatgacaccacccgccgcgatatcgtccgtctgctcgggcttaacgat
ccgctgattcaggtcagcagcttcgaccgtccaaacatccgctatatgctgatggagaaa
ttcaaaccgctcgaccagttgatgcgctacgttcaggatcagcgcggcaaatcgggcatc
atctactgcaacagccgctcgaaagtggaagataccgccgcgcgtctgcagagccgcggc
atcagcgcggcggcttaccatgctggtctggaaaacgccgttcgcgccgacgtgcaggag
aaattccagcgcgacgatctgcagatcgtggtggcgacggtggccttcgggatgggtatc
aacaagccgaacgtccgctttgtggtgcacttcgatatcccgcgcaatattgaatcttac
taccaggaaaccggccgcgccgggcgtgatggcctgccggcggaagcgatgctgttttac
gatccggcggatatggcgtggctgcgccgctgtctggaagaaaagcccgccggaccgcta
caggatatcgagcggcataagctgaatgcgatgggggcgtttgctgaagcgcaaacctgc
cgtcgtctggtgctgctgaactactttggcgaagggcgtcaggagccgtgcggcaactgc
gatatctgtcttgatccgccaaagcagtacgatggcttaatggatgcgcgcaaggcgctt
tcaacgatttaccgggtgaatcaacgtttcgggatgggttacgtggtggaggttctgcgc
ggggccaacaaccagcgcatccgtgacatgggccacgataagctgccggtttacggtatc
ggccgggagcagagtcacgagcactgggtgagcgtgatccgccaactgattcaccttggg
ctggtgacgcagaatatcgcccagcactccgcactgcagctgaccgaagccgcacgaccg
gtgctgcgcggcgaggtgccgctgcagcttgccgtaccgcgtatcgtggcgctgaagccg
aaggcgatgcagaaatcctttggcggcaattacgaccgcaagctgtttgccaagctgcgc
aaattgcgtaaagcgatcgccgacgaagagaatatcccgccatacgtggtcttcaacgac
gcgacgctgatcgagatggcggaacagtcgccactcaccgccggggagatgctcagcgtc
aacggcgtggggacgcgtaaacttgagcgcttcggtaaagaattcatggcattgatacgc
gctcatgtcgatggtgatgatgagtag
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