Kocuria varians: CIB50_0002034
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Entry
CIB50_0002034 CDS
T06882
Symbol
rng
Name
(GenBank) Ribonuclease G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
kvr
Kocuria varians
Pathway
kvr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kvr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CIB50_0002034 (rng)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kvr03019
]
CIB50_0002034 (rng)
03009 Ribosome biogenesis [BR:
kvr03009
]
CIB50_0002034 (rng)
Enzymes [BR:
kvr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CIB50_0002034 (rng)
Messenger RNA biogenesis [BR:
kvr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CIB50_0002034 (rng)
Ribosome biogenesis [BR:
kvr03009
]
Prokaryotic type
rRNA processing factors
CIB50_0002034 (rng)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
S1
NT5C
PCB_OB
Motif
Other DBs
NCBI-ProteinID:
QMS57299
UniProt:
A0A7D7Q177
LinkDB
All DBs
Position
complement(2312007..2315525)
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AA seq
1172 aa
AA seq
DB search
MESEQENSQSPLEAAASTPVEQDAAASPEPAASVADDAAAVAAEPSAPAPEGTAPEPSDA
DDAAAEVAVETASVEATEGRTTETQATEAQATDEESAAPATVGEVPAGDTKAAAALGAAS
QEPAATPTDAGAAQGEATPSESAQQCEAAETVEVVENVTVEVTEEESEEETEPPTQEDFG
AFGPGASLMFHAPDPDEIRKAAEAQAARLREAAQEREAQREAERAARGDHEDEDESGSAS
SKRRRRRRRGEEDMELVDDSDGSVTRVRAPRGGSEGTGPDEVVGVKGSTRLEAKRQRRRE
SRQFGRKRHVITEAEFLARRESVERTMLVRQKENRIQIGVLEDGILAEHFVSHTQQDSLI
GNVYVGKVQNVLPSMEAAFVDIGRGRNAVLYAGEVDWDAAELGKKPRKIENALKSGDTVL
VQVTKDPVGHKGARLTSQVSLPGRYLVYVPGGSMTGISRKLPDVERQRLKKILKDRLPEG
AGVIVRTAAEGASETELTNDINRLRSQWEQIQEKAASTKTLAPEMLYAEPDLTIKTVRDV
FNEDFTAMVVEGEQAWDNIEAYVTYVAPDLLDRLHRWTEDEDLFEHMRVEEQIHKALERK
VFLPSGGSLVIDRTEAMTVVDVNTGKFTGSGGNLEETVTKNNLEAAEEIVRQLRLRDIGG
IIVVDFIDMVLESNRDLVLRRLVECLGRDRTKHQVAEVTSLGLVQMTRKRMGTGLLEVFS
EPCEECAGRGVVVHDHPLKGRSSAAPADHRGNRNERKRSRSGKPQGNQQQDRSRSQNRGG
GSEEQENQARAEATRAALASIASASAHEDDDAAQHGSGAEDTQQGGGQNRQDSDTHGTSE
AHGSGDTHGNSDHRGTSDGESEGGRRRKKRRGKRSRGRGPQGEENGNQQDSSADAGNSSE
DADSSSSVTIHGEVIELPQGQSGQDRSGADGDSSESLSLDSLTAAFTEETSGDSAPSGKN
RGGSGAPDSENSDGSEGKGSEDSGSRGGNSRSRSSNSRGGSRQGSRRGGRDGGSRENTGR
DNGGRDTAGGDTADRSTGGRGNGAQESGADKGNRRNADAKASAATAPSGGRSDIGASDNG
TSGNRTATTAQPTAETPAPARRRRGSRRAVAPAAAPGTASVTTQEYEAQKSTVSRFTAAA
TGSKKAVATDGQPTVVGVGVKAQDITMTRKGE
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atggaatctgagcaggaaaactcccagtccccgctggaggccgcggcctccacccccgtt
gaacaggacgccgccgcaagccccgagcccgccgcctctgtggcggacgacgccgccgcg
gtcgccgccgagccttcggctccggcacccgagggcaccgcgccggagcccagcgatgcg
gatgacgccgccgctgaggttgccgtcgagacggcttccgtcgaggccaccgaagggcgg
accaccgaaacgcaggccaccgaggcgcaggccaccgacgaggagagcgccgccccggcc
acggtcggcgaggtccccgcgggggacaccaaggccgccgccgccctcggtgccgcgtcg
caggagcccgcggcaacgcccacggacgctggtgcggctcagggcgaggccacgccgtcg
gagtccgcgcagcagtgtgaggcggccgagacggtcgaggtcgtcgagaacgtgaccgtc
gaggtcactgaggaggagtccgaggaggagaccgagccccccacgcaggaagacttcggc
gccttcggtcccggtgcgtccctgatgttccacgccccggacccggacgagatccgcaag
gccgccgaggcgcaggccgcccgcctgcgcgaggccgcccaggagcgcgaggcgcagcgg
gaggccgagcgtgccgcccgcggcgaccacgaggacgaggacgagtcgggcagcgcctcc
agcaagcggcgtcgtcgtcggcgccgtggcgaggaggacatggagctcgtggacgactcc
gacggctccgtgacccgcgtgcgcgccccccgcggcggctccgagggcaccggccctgac
gaggtcgtgggcgtcaagggctccacgcgcctggaggccaagcgccagcggcgccgcgag
tcccgtcagttcggccgcaagcgccacgtgatcacagaggccgagttcctcgcgcgccgc
gagtccgtggagcgcacgatgctcgtgcgccagaaggagaaccggatccagatcggcgtg
ctggaggacggcatcctcgcggagcacttcgtctcccacacgcagcaggactccctgatc
ggcaacgtgtacgtgggcaaggtgcagaacgtgctgccgtccatggaggcggcgttcgtg
gacatcgggcgcggccgcaacgccgtgctctacgccggtgaggtggactgggacgccgcc
gagctcggcaagaagccccgcaagatcgagaacgccctgaagtccggggacaccgtcctc
gtgcaggtcaccaaggacccggtgggccacaagggtgcccgcctgacgagccaggtctcg
ctgcccggccgctatctcgtgtacgtgcccggtggttccatgaccggcatctcccgcaag
ctgccggacgtcgagcgccagcggctgaagaagatcctcaaggaccggctgcccgagggc
gcgggcgtgatcgtgcgcaccgccgcggagggcgcctccgagaccgagctgaccaacgac
atcaaccggctgcggtcccagtgggagcagatccaggagaaggcggcgtccaccaagacg
ctcgccccggagatgctctacgcggagccggacctgaccatcaagaccgtccgcgacgtc
ttcaacgaggacttcaccgccatggtggtcgagggcgagcaggcgtgggacaacatcgag
gcctacgtgacctacgtggccccggacctgctggaccggctgcaccgctggaccgaggac
gaggacctcttcgagcacatgcgcgtggaggagcagatccacaaggcactggagcgcaag
gtgttcctgccctccggcggctccctggtgatcgaccgcaccgaggccatgaccgtggtg
gacgtcaacacgggcaagttcacgggctccggcggcaacctcgaggagaccgtcaccaag
aacaacctggaggccgccgaggagatcgtgcgccagcttcggctgcgggacatcggcggg
atcatcgtggtcgacttcatcgacatggtgctcgagtccaaccgcgacctcgtgctgcgc
cggctcgtggagtgcctgggccgggaccgcaccaagcaccaggtggccgaggtgacctcg
ctgggtctcgtgcagatgacgcgcaagcgcatgggcaccgggctgctcgaggtcttctcg
gagccgtgcgaggagtgcgcgggacgcggcgtcgtcgtccacgaccacccgctcaagggc
cgctccagcgccgcccccgcggaccaccgcggcaaccgcaacgagcgcaagcgctcgcgc
tccggcaagccccagggcaaccagcagcaggaccgttcccggtcccagaaccgcggcggc
ggctccgaggagcaggagaaccaggcccgcgccgaggccacccgcgccgcgctcgcgagc
atcgcctccgcgtccgcgcacgaggacgacgacgccgcgcagcacggttccggtgccgag
gacacccagcagggtggcgggcagaaccggcaggactcggacacgcacggtacgtccgag
gcccacggctccggggacacccacgggaactcggaccaccgtggcacctcggacggcgag
tccgagggcggccgccgccggaagaagcgccgcggcaagcgcagccggggccgcgggccc
cagggcgaggagaacggcaaccagcaggacagctcggcggatgccgggaactcctccgag
gacgccgacagctcctccagcgtgacgatccacggcgaggtcatcgagctcccgcaggga
cagtccggccaagaccgctccggcgcggacggagactcctcggaatcgctctcgctggac
tcgctgacggcggcgttcacggaggagacctccggtgactccgcgccgtcggggaagaac
cgcggcggatccggtgcgccggactccgagaactccgacggttccgagggcaagggctcc
gaggattccggttcgcgcgggggcaactcccgcagccgctcgtccaacagccggggcggg
tctcgccagggcagccgccgtggaggacgcgacggcgggtcccgtgagaacaccggtcgg
gacaacggcggtcgtgacactgccggcggcgatacggccgaccggagcaccggcggccgc
ggcaacggtgcgcaggagagcggcgccgacaagggcaatcgtcggaacgcggacgcgaag
gcctcggcggccaccgcaccctccggtggccgttcggacatcggcgcctcggacaatggc
acctcgggcaaccggaccgccaccaccgcccagccgacggccgagacgccggcgccggcg
cggcgtcgtcgtggctcgcgccgagcggtggcaccggcggcggctcccggcaccgcgagc
gtgaccacccaggagtacgaggcgcagaagtccaccgtcagccgcttcaccgcggcggcc
accggctcgaagaaggccgtggccacggacgggcagcccaccgtggtgggcgtgggcgtg
aaggcccaggacatcacgatgacccgcaagggcgagtga
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