Lysobacter antibioticus 76: LA76x_3936
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Entry
LA76x_3936 CDS
T04154
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
lab
Lysobacter antibioticus 76
Pathway
lab03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lab00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LA76x_3936 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lab03021
]
LA76x_3936 (rpoB)
03400 DNA repair and recombination proteins [BR:
lab03400
]
LA76x_3936 (rpoB)
Enzymes [BR:
lab01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LA76x_3936 (rpoB)
Transcription machinery [BR:
lab03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LA76x_3936 (rpoB)
DNA repair and recombination proteins [BR:
lab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LA76x_3936 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
DOCK-C2
Motif
Other DBs
NCBI-ProteinID:
ALN82058
UniProt:
A0A0S2E1B3
LinkDB
All DBs
Position
complement(4509144..4513307)
Genome browser
AA seq
1387 aa
AA seq
DB search
MTTASTNYSFTEKKRIRKDFGKRKSILEVPFLLAIQVDSYREFLQEHTDPAKRADRGLHA
ALKSVFPISSYSGNAALEYVGYKLGDPVFDERECRNRGLSYGAPLRVTVRLVIYDRESST
KAIKYVKEQEVYMGEIPLMTDNGTFIVNGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLL
YSARIIPYRGSWLDFEFDPKDALFTRIDRRRKLPVTVLLRALGYNNEEMLAEFFEINTFH
IMSEGVQWELVSERLRGETLDFDLADGDKVIVEAGKRITARHVKQLEQSGIAALAVPDSY
LVGRILSHDVVDTRSGELLASANDEISDDQLAAFRKAGIESVGTIWVNDLDRGPYISNTL
RIDPSKTQLEALVEIYRMMRPGEPPTKDAAQNLFHNLFFTFERYDLSGVGRMKFNRRIGR
KETLGASVLYDAKYFAERKDDESVRLRNELGKTSDILDVIRVLTEIRNGRGVVDDIDHLG
NRRVRSVGEMAENTFRVGLVRVERAVKERLSMAESEGLTPQELINAKPVAAAIKEFFGSS
QLSQFMDQNNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCTIETPEGPNI
GLINSLAVFARTNKYGFLETPYRKVVDGKVTDDVEFLSAIEENEYVIAQANAPQDDKGMI
SSQFVACRYQGETLLKPPSEIHFMDVSPMQTVSVAAALVPFLEHDDANRALMGANMQRQA
VPTLKAQKPLVGTGIERAVARDSGVTVNALRGGTIEQIDAARIVVKVNESEISGVTDAGV
DIYNLIKYTRSNQNTCINQSPLVKVGDVIARGDVLADGPSTDIGELALGQNMLVAFMPWN
GYNFEDSILLSERVVEEDRYTTIHIEELTCVARDTKLGPEEISADIPNVSEQALNRLDES
GVVYIGAEVRAGDILVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGMDGTV
IDVQVFTRDGIEKDKRARQIEESEIRRVKKDFDDQFRILEAAIYDRLRSQLIGKTANGGA
GLKKGDTVTSLVLDGLKKSDWFTLRMKDEDAIEAIERAQKQIDVHQKEFDRRFADKRGKI
TQGDDLAPGVLKMVKVFLAVKRRIQPGDKMAGRHGNKGVVSTIVPVEDMPYAADGQTVDI
VLNPLGVPSRMNIGQILEVHLGWAAKGLGQKIQRMLEAQQKIAELRKFLDDIYNHDQKLH
GQRVDLKQFTDEELLTLAHNLVDGVPMATPVFDGAAEFEIKRMLELAELPSSGQTILHDG
RTGEAFERPVTIGYMHMLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEV
WALEAYGAAYTLQEMLTVKSDDVQGRNQMYKNIVDGEYEMVAGMPESFNVLVKEIRSLAI
NMELEEN
NT seq
4164 nt
NT seq
+upstream
nt +downstream
nt
atgaccacagcttccacgaactattcgttcaccgaaaagaagcgcatccgcaaggatttc
ggcaagcgcaaatccatcctcgaagtgccgttcctgctcgcgatccaggtcgactcctat
cgcgaattcctgcaggaacataccgacccggccaagcgtgccgatcgcggcctgcatgcg
gccctcaagtcggtgttcccgatctccagctacagcggcaacgctgctctcgaatacgtc
ggctacaagctcggcgatccggtgttcgatgagcgcgagtgccgcaaccgcggcctgtcc
tacggcgccccgctgcgcgtgaccgtgcgcctggtgatctacgaccgcgagtcgtcgacc
aaggccatcaagtacgtgaaggagcaagaggtctacatgggcgaaatcccgctcatgacc
gacaacggcaccttcatcgtcaacggcaccgagcgcgtcatcgtctcgcagctgcaccgc
tcgcccggcgtgttcttcgaccacgaccgcggcaagacccacagctcgggcaagctgctg
tacagcgcccgcatcattccctaccgcggttcctggctcgacttcgagttcgacccgaag
gacgcgctgttcacccgtatcgaccgtcgccgcaagctgccggtcaccgtgctgctgcgc
gcgctcggctacaacaacgaagaaatgctcgccgagttcttcgagatcaacaccttccac
atcatgtccgagggcgtgcagtgggagctggtctccgagcgcctgcgcggcgaaaccctg
gacttcgatctggccgacggcgacaaggtcatcgtcgaagccggcaagcgcatcaccgcg
cgccacgtcaagcagctcgagcagtccggcatcgccgcgctggccgtgcccgacagctac
ctggtcggccgcatcctgtcgcacgacgtcgtcgacacccgttccggcgaactgctggcc
tcggccaacgacgaaatcagcgacgaccagctcgccgcgttccgcaaggccggcatcgag
tcggtcggcacgatctgggtcaacgacctcgaccgcggtccgtacatctccaacaccctg
cgcatcgatccgtcgaagacgcagctggaagccctggtcgaaatctaccggatgatgcgt
ccgggcgagccgccgaccaaggacgccgcgcagaacctgttccacaacctgttcttcacc
ttcgagcgctacgacctgtcgggcgtcggccggatgaagttcaaccgccgcatcggccgc
aaggaaaccctcggcgcctcggtgctgtacgacgccaagtacttcgccgagcgcaaggac
gacgagtccgtgcgcctgcgcaacgagctgggcaagacctcggacatcctcgacgtcatc
cgcgtcctgaccgagatccgcaacggccgcggcgtggtcgacgacatcgatcacctgggc
aaccgtcgcgtgcgttcggtcggcgaaatggccgagaacaccttccgcgtcggcctggtc
cgcgtcgagcgcgcggtcaaggaacgcctgtcgatggccgagtccgaaggcctcacgccg
caggaactgatcaacgccaagccggtggccgccgcgatcaaggagttcttcggctcctcg
cagctgtcgcagttcatggaccagaacaacccgctgtcggaagtcacgcacaagcgtcgc
gtgtcggccctcggcccgggcggcctgacccgcgagcgcgccggcttcgaagtgcgcgac
gtgcacccgacccattacggccgcgtgtgcaccatcgaaacgcctgaaggcccgaacatc
ggcctgatcaactcgctggccgtgttcgcccgcaccaacaagtacggcttcctcgagacg
ccgtaccgcaaggtcgtggacggcaaggtcaccgacgacgtcgagttcctctcggcgatc
gaagagaacgagtacgtcatcgcccaggccaacgcgccgcaggacgacaagggcatgatc
agctcgcagttcgtcgcctgccgttaccagggcgaaaccctgctcaagccgccgtccgag
atccacttcatggacgtctcgccgatgcagaccgtgtcggtcgcggccgcgctggttccg
ttcctcgagcacgacgacgccaaccgcgcactgatgggcgcgaacatgcagcgtcaggcc
gtcccgaccctgaaggcgcagaagccgctggtcggtaccggcatcgagcgcgccgtggcg
cgcgactcgggcgtcaccgtgaatgcgctgcgcggcggcacgatcgagcagatcgatgcg
gcccgtatcgtggtcaaggtcaacgagtcggaaatctccggcgtcaccgatgccggcgtc
gacatctacaacctgatcaagtacacgcgttcgaaccagaacacctgtatcaaccagagc
ccgctggtcaaggtcggcgacgtcatcgcccgcggcgacgtgctggccgacggcccctcg
accgacatcggcgagctcgcgctcggccagaacatgctggtcgcgttcatgccgtggaac
ggctacaacttcgaagactcgatcctgctctccgagcgcgtggtcgaagaggatcgctac
accacgatccacatcgaagaactgacctgcgtcgcgcgcgacaccaagctgggaccggag
gaaatctccgccgacatcccgaacgtctccgagcaggcgctgaaccgcctcgacgagtcg
ggcgtggtgtacatcggcgccgaagtccgcgccggcgacatcctggtcggcaaggtcacg
ccgaagggcgagagccagctgaccccggaagagaagctgctgcgcgcgatcttcggcgag
aaggcttcggacgttaaggacagctcgctgcgcgtgcctccgggcatggacggcaccgtc
atcgacgtgcaggtcttcacccgcgacggcatcgagaaggacaagcgcgcccgccagatc
gaagagtcggaaatccgtcgcgtcaagaaggacttcgacgaccagttccgcatcctcgaa
gcggcgatctacgaccgtctgcgttcgcagctgatcggcaagaccgccaacggcggcgcc
ggcctgaagaagggcgacacggtcaccagcctggtgctcgacggtctgaagaagtccgat
tggttcaccctgcgcatgaaggacgaggacgcgatcgaagcgatcgaacgcgcccagaag
cagatcgacgtccaccagaaggaattcgaccgccgcttcgccgacaagcgcggcaagatc
acccagggcgacgacctcgcgccgggcgtgctcaagatggtcaaggtgttcctggcggtt
aagcgccgcatccagccgggcgacaagatggccggccgtcacggcaacaagggtgtcgtg
tcgaccatcgtgccggtcgaggacatgccgtacgcggccgacggccagaccgtcgacatc
gtgctgaacccgctgggcgtgccgtcgcgtatgaacatcggccagatcctcgaagtgcat
ctgggctgggccgccaagggcctgggccagaagatccagcgcatgctggaggcgcagcag
aagatcgccgaactgcgcaagttcctggacgacatctacaaccacgaccagaagctgcac
ggccagcgcgtcgacctgaagcaattcaccgacgaagagctgctgaccctggcgcacaac
ctggtcgacggcgtgccgatggcgacgccggtgttcgacggcgcggccgagttcgagatc
aagcgcatgctcgagctggccgaactgccgagcagcggtcagacgatcctgcacgacggc
cgcaccggcgaagcgttcgagcgtccggtcacgatcggctacatgcacatgctgaagctg
aaccacctcgtcgacgacaagatgcacgcgcgttcgaccggtccgtactcgctcgttacc
cagcagccgctgggcggcaaggcgcagttcggcggccagcgtttcggcgaaatggaagtc
tgggcgctggaagcctacggcgcggcctacaccctgcaggaaatgctgacggtgaagtcc
gacgacgtgcagggccgcaaccagatgtacaagaacatcgtcgacggcgagtacgaaatg
gtcgccggcatgccggagtccttcaacgtgctcgtgaaggaaatccgctcgctcgcgatc
aacatggagctggaagagaactga
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integrated database retrieval system
