Labrenzia sp. THAF35: FIU93_03510
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Entry
FIU93_03510 CDS
T06351
Symbol
recQ1
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
labt
Labrenzia sp. THAF35
Pathway
labt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
labt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FIU93_03510 (recQ1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
labt03019
]
FIU93_03510 (recQ1)
03400 DNA repair and recombination proteins [BR:
labt03400
]
FIU93_03510 (recQ1)
Enzymes [BR:
labt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FIU93_03510 (recQ1)
Messenger RNA biogenesis [BR:
labt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FIU93_03510 (recQ1)
DNA repair and recombination proteins [BR:
labt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
FIU93_03510 (recQ1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
QFT65833
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All DBs
Position
748415..750304
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AA seq
629 aa
AA seq
DB search
MPVSPAVAAEEVIPVQHAVAPTVRPEPKPLAVLQKVFGYSSFRGKQQAVIETLVDGNDAV
VLFPTGAGKSLCYQIPALCRRGVGIVVSPLIALMKDQVGALRAAGVQAAALNSTLSPEEQ
DGIRSALRRGEIDLLYVTPERLGTESFRKFLDTLQIALFAIDEAHCVSQWGHDFRPEYMS
LSCLRDRYPGVPRVALTATADPHTQKDILARLQLEDAAVFSTSFDRPNIRYEIVERTNQR
QQLLDFLKKHSGESGIVYCLSRAKVEDIAEWLTSKGIRALPYHAGLPAEQRSANQDAFLL
EEGLCLVATVAFGMGIDKPDVRYVAHLDLPSSVEAYYQETGRAGRDGAPSEAFMAYGMAD
LVQRRRMIAEGDAPEEVKRAENAKLNALLGICETAGCRRQALLAHFGETYPKPCGNCDTC
LSPVETWDGTEAAQKLMSAIYRTGQRFGTAHVIDVLLGKTNEKSTRFGHDTLSVFGIGQD
VPQKTWQSIARQLVAAGYVDVDHAQFGALVLTEKARSVLRGDEKLALRKDRSAAGLKRTS
SSRTASIADELDHEDRLLFERLRRLRTQIARDQGVPPYVVFTDATLAGISAARPVTEDAL
LAVSGVGQSKLEKYGEAFLELVEAFEAGV
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgcccgtttcgcccgctgttgccgcggaggaagtcattccagtgcagcatgccgttgct
ccgaccgtgcgtccggagccgaagccgcttgcggttctgcagaaggttttcggctacagc
agcttcaggggcaagcagcaggcggtgatcgaaacgcttgtggacggcaacgacgctgtc
gttctgtttcccaccggcgcaggcaagtcgctctgttaccagatcccggcgctgtgccgg
cgtggggtcggcattgtcgtctcgccgctgatcgcgctgatgaaagaccaggtcggtgcg
cttcgcgccgctggcgttcaggccgcggccctcaattccacgctgtcacctgaagaacag
gacggcattcgcagtgccctgcgccgcggtgaaatcgacctgctctacgtgacaccggag
cggctgggcaccgagagcttccgcaagttcctggacacgctgcagattgccctttttgcc
atcgatgaagcgcattgcgtcagccagtggggacatgacttccgtccggagtacatgtcg
ctgtcctgtctgcgcgaccgctatccgggcgtgccgcgtgtggcgttgaccgcgactgcc
gacccgcacacccaaaaagacattctggcccgcctgcagctggaagacgccgccgtcttt
tccaccagcttcgaccggcccaacatccgctacgagattgtcgagcgcaccaaccagcgc
cagcagctgctggatttcctgaagaagcactccggcgagagcggcatcgtctattgcctg
tcgcgggcaaaggtcgaggacatcgccgaatggctgacctctaagggcatcagggccctg
ccctatcacgccggattgcccgcggaacagcgctccgccaaccaggatgcgtttctgctg
gaagaagggctgtgcctggtggcgacggttgccttcggcatgggtatcgacaagccggat
gtgcgctatgtcgcgcatctggatctgccctcttcggtcgaggcctattaccaggaaacc
ggccgtgcaggccgcgacggcgctccctccgaagccttcatggcttacggcatggccgat
ctggtgcagcgccggcgcatgattgccgagggcgatgctcccgaggaggtcaagcgcgcg
gaaaatgccaagctgaacgcgcttctcggcatctgcgaaacggccggttgccgtcgccag
gccctgctggcccatttcggcgagacctaccccaaaccctgtggcaactgcgacacctgc
ctgtccccggtagagacctgggacggcacggaagctgcccaaaagctgatgtcggcgatc
tatcgtactggtcaacgtttcggcacggcgcatgtcatagatgtgcttctgggcaagacc
aacgagaaaagcacccgcttcggccacgacacgctgtcggttttcggaattggccaggac
gtgccgcagaagacctggcagtcgattgcccgtcagcttgtcgccgcaggctacgtcgat
gtagaccatgcccagttcggtgctctggttctgacggaaaaggcgcggagcgtcctgcgc
ggtgacgagaagctcgccttgcgcaaggaccggagcgcggctggcctgaaacggacgagt
tcttcacgtacggcctccatcgccgatgaactggaccatgaagacaggctgctgtttgaa
cgcttgcgcaggctgcggacccagattgcccgagatcagggcgtaccgccctatgtggtg
ttcacggacgcgacgctggccgggatttccgctgcgcgcccggtgaccgaagatgcgctg
ctggccgtttccggtgtcgggcagtccaaacttgaaaaatacggcgaggcgttcctcgag
ctggtcgaggcatttgaagccggcgtatga
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