Lactobacillus acidophilus NCFM: LBA0667
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Entry
LBA0667 CDS
T00231
Symbol
ymdA
Name
(GenBank) HD superfamily hydrolase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
lac
Lactobacillus acidophilus NCFM
Pathway
lac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LBA0667 (ymdA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lac03019
]
LBA0667 (ymdA)
Messenger RNA biogenesis [BR:
lac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LBA0667 (ymdA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_PNO1_2nd
KH_KhpA-B
NYD-SP28_assoc
KH_NusA_2nd
POU2AF2
KH_2
Motif
Other DBs
NCBI-ProteinID:
AAV42543
UniProt:
Q5FL81
LinkDB
All DBs
Position
652801..654432
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AA seq
543 aa
AA seq
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MNTIIMIPVATAIVSLLVGTVTGYAIRKHSWEQKAQNAQNDADHILADAKAQVAAAEAEV
NAQKQAAIAVKQSAENTKKEKILEAQEQIRDYRQKTEDELNSKKDNLARQENRLQQREDT
LDHKNSLLDEREAGLTEKEDQLKQQNASLKAKLDEADELVGIRRQKLYDVAKLDKDQAKK
IVLDQLSDELVKERAEMIRNSNEEVMAKADRYANQVIIDAIQSSAADTVAETTVSVVDLP
NEEMKGRIIGREGRNIRSFEALTGIDLIIDDTPKVVTLSGFDPIRREIAKRAMERLIKDG
RIHPARIEEMVDKARKEVNDDIYEAGESALMELGIHRMNPELVKTLGRLKYHTSYGQNVL
SHSIEVGKLAGTMAAELGLDEKLAVRAGLLHDIGKAIDHDIEGSHVEIGVELTRKYHEPD
VVVNAIAAHHGDVPKLSFIAELVVAADTISSARPGARSESLENYIRRLTDLEKIAKSYQG
VKQAYAIQAGREVRVMVEPDEISDDRTVILARDIRNQVEKELDYPGNIKITVIREKRVVA
IAK
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
atgaatacaataattatgattcccgtcgcgactgctattgtttcacttttagtgggcaca
gttactggttatgctattcgtaagcattcttgggagcaaaaagctcagaatgctcaaaat
gatgctgaccatatcttggctgatgctaaagctcaagtagcggcagcggaagcagaagtc
aatgcacaaaagcaagcagcaattgctgttaaacaaagtgcagaaaatactaagaaagaa
aaaattcttgaagcacaagaacaaattcgagattataggcaaaaaactgaagatgagcta
aattctaaaaaggacaatttggctcgtcaagaaaatcgtttacaacaacgtgaagatacc
ttagatcataagaattctttgttagatgaaagagaagctgggcttacagaaaaagaagac
caattaaagcagcaaaatgctagtttaaaggcaaaattggatgaagctgacgaattagtt
gggattagacgacagaaactttatgacgtagcaaaattagataaagatcaagctaagaag
attgtgctagatcaattatctgatgaattagttaaagaacgcgctgaaatgattagaaat
agtaacgaagaggttatggctaaagcagatcgttatgctaatcaagttattattgatgct
attcaaagcagcgctgcagatacggttgctgaaacaacagtatctgttgttgatttacca
aatgaagaaatgaaaggtcgaattattggacgcgaaggccgtaatattcgttcttttgaa
gctttaactggtatagatttaattattgatgatacgccgaaagttgtaactttaagtggt
tttgacccaattagacgtgaaattgctaaaagagcgatggaacgcttgatcaaagatggt
cgaattcatccagctcgtattgaagagatggttgataaggctagaaaagaagttaatgac
gatatttatgaagcaggtgaaagtgctctgatggaacttggaattcatagaatgaatcca
gagcttgttaaaacacttggccgcttaaaatatcatacttcttatggtcaaaatgtattg
tctcattcaattgaagttggtaaattagctggtactatggctgccgaactgggcttagat
gaaaaattagcggttcgcgcgggattattacacgatataggaaaagcaatcgatcatgat
attgaaggctctcacgtagaaataggtgtagagttgacgcgtaaatatcatgaaccagat
gttgtggttaatgcaattgctgcacaccatggtgacgtgcctaaattatcatttattgct
gaacttgtagttgcagcagatacgatttcttcagctcgacctggtgcaagaagtgaaagt
ttggaaaattatatcagacgtttaacagatcttgaaaagatcgctaaaagctaccaggga
gttaagcaagcatatgcaattcaagctggtcgtgaagttagagttatggttgaacctgat
gaaatttcagatgatcgaacagtaattttagcacgtgacattcgtaatcaagttgaaaaa
gagcttgattatccgggtaatattaagattaccgttatccgtgaaaaacgagtggtagca
attgctaaataa
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