Lacibacter sediminis: H4075_06475
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Entry
H4075_06475 CDS
T06746
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
lacs
Lacibacter sediminis
Pathway
lacs03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lacs00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
H4075_06475 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lacs03021
]
H4075_06475 (rpoB)
03400 DNA repair and recombination proteins [BR:
lacs03400
]
H4075_06475 (rpoB)
Enzymes [BR:
lacs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
H4075_06475 (rpoB)
Transcription machinery [BR:
lacs03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
H4075_06475 (rpoB)
DNA repair and recombination proteins [BR:
lacs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
H4075_06475 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
QNA45834
UniProt:
A0A7G5XK31
LinkDB
All DBs
Position
1486910..1490722
Genome browser
AA seq
1270 aa
AA seq
DB search
MSSSRVAANKRINFGKVKHLAEIPDLLGIQIQSFKEYFQLETTPDKRNIEGLFRVFKENF
PITDTRNIFVLEFLDYFIDPPRYSIDECMERGLTYAVPLKAKLRLSCNDEEHVDFQTIVQ
DVFLGNIPYMTPRGTFVINGAERVVVSQLHRSPGVFFGQSIHPNGTKIYSARVIPFKGAW
MEFATDINNVMYAYIDRKKKFPVTTLLRSIGFETDKDILELFGMADEVKADKKALEKYEG
KRLAARVLRSWVEDFVDEDTGEVVSIERNEVVLERDSILDAEAIEMISEMEVKSVFVQKE
EVSGDFAIIYNTLNKDTSNSELEAVQHIYRQLRGADAPDNETARGIIDKLFFSDKRYDLG
EVGRYKINRKLGLNFPIEKKVLTKDDIISIIKYLVKLTNAKAEIDDIDHLSNRRVRTVGE
QLYAQFGVGLARMARTIRERMNVRDNEVFTPVDLINARTLSSVINSFFGTSQLSQFLDQT
NPLSEITHKRRISALGPGGLSRERAGFEVRDVHYSHYGRLCTIETPEGPNIGLISTLCVH
ATVNDMGFIETPYRKVENGKADVKHLTYLSAEEEDTAKIAQVNIAIDDKGNITEDKVRSR
ESGDFPILERAEVEYMDVAPNQIVGLSASLIPFLEHDDANRALMGSNMQRQAVPLVRPQA
PIVGTGLEAMAARDSRIQLNAEGKGVVEYVDANEIHVRYDRNEEQRLVSFEEDLKIYKLT
KFIKTNQSTCINLKPAVKKGQAVKEGDFLTEGYAVKDGELALGRNLKVAFMPWKGYNFED
AIVINEKVVKEDLFTSVHVEEYELEVRDTKLGEEELTPDIPNVSEEATKDLDQNGIIRIG
AAIKEGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDAKDASLKAPSGTEGVVIDKKLF
QRAKKDKNGKIREKALLEKVEKIHEKNTTDLLDVLLSKLLSLLQTKTSAGVNNNFGESLI
GKGAKFNQKNLATIDYANVNPLGWTGDATTDEWINQLLHNYNIKYNEELGRYKREKFNIS
IGDELPAGVLKLAKVYLAVKRKLKVGDKMAGRHGNKGIVAKIVRQEDMPFLEDGTPVDIV
LNPLGVPSRMNLGQIYETVLGWAGEKLGVKFATPIFDGATVEEIAGHIADAGLPLFGHTF
LYDGETGERFHQKATVGIIYMIKLHHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFG
EMEVWALEAYGASNILQELLTLKSDDIMGRAKTYEAIVKGDNIPRPGIPESFNVLVHELR
GLGLDLKFEE
NT seq
3813 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcatcaagagttgcagcaaacaagagaattaatttcggaaaagtaaaacacctt
gcagagattccagacctgttaggtatccagattcaatcttttaaagagtattttcagtta
gaaactactcctgacaaacgtaacattgaagggttattccgtgtattcaaggaaaacttt
cctatcactgatacacgtaacattttcgttctggagtttctcgattactttattgatcca
ccccgttactctatcgacgagtgtatggagcgtggattaacatatgcggttccactcaaa
gccaaactccgtttgagctgtaatgatgaggaacacgtagatttccaaaccatcgttcag
gatgtgttcttaggaaacattccttacatgactccccgtggtacattcgtgatcaatggt
gctgagcgtgtagtggtatctcaattacaccgttcacccggtgtattcttcggtcaatca
attcaccccaacggaactaagatttactctgcaagggtaattcctttcaaaggtgcgtgg
atggagtttgcaacagacatcaacaatgtgatgtatgcttacatcgatcgtaagaaaaaa
ttccctgtaacaacactcttacgttctatcggcttcgaaacagataaggatatccttgaa
ctgtttggtatggctgatgaagtaaaagcagataagaaagctttggagaaatacgaaggc
aagcgtttagctgctcgagtactccgtagctgggttgaagatttcgtagatgaggataca
ggtgaagtagtgagcatcgagcgtaacgaagtggtattggaacgtgattcaattcttgat
gctgaagcgatcgaaatgatcagcgaaatggaagtgaagagcgtattcgtacagaaagaa
gaagtgagtggtgacttcgctatcatctacaacacattaaataaagatacttctaacagt
gagttggaagctgtacagcatatctatcgccaattgcgtggtgctgatgcgcctgataac
gaaactgcacgtggtattattgataaattattctttagtgataagcgttatgatctcggt
gaagttggtcgttacaagatcaaccgtaaacttggattgaacttccctattgagaaaaag
gtattaaccaaagatgatatcatctctatcattaaatacctggtgaagttaaccaacgct
aaagctgagatcgatgatattgatcacctcagtaaccgtcgtgtgcgtacagtgggtgag
caattatatgctcagttcggtgtaggtcttgcacgtatggcccgtaccattcgtgaaaga
atgaatgtacgtgacaacgaggtatttactccggttgatttgatcaatgcaagaacactt
tcttctgtgatcaactcattctttggtacatcacagttatcacagttcttagatcaaaca
aaccctctgagtgagatcacgcacaagcgtcgtatctccgcactcggacccggtggtttg
agtcgtgaaagagctggtttcgaggtgcgtgacgttcactactcacactatggtcgtctt
tgtacaattgaaacgcctgaaggtccaaacattggtttgatctctacactttgtgtacac
gctactgtaaatgatatgggctttattgaaacgccttatcgtaaagtagaaaatggtaaa
gctgatgtaaaacatcttacttacctgagtgcagaagaagaagatacagcgaagatcgca
caggtgaatatcgctattgacgataaaggaaacattactgaagataaagttcgctcacgt
gaaagtggtgacttcccgattcttgaaagagcagaggtggaatacatggacgttgcgcca
aaccagatcgttggtttgagtgcgtcattgattccgttccttgagcatgatgatgccaac
cgtgcattgatgggatcgaacatgcaacgtcaggcggttccgcttgtacgtccgcaggct
ccaatcgttggtactggtttggaagcaatggcagctcgtgacagccgtattcagttgaat
gctgaaggaaagggtgttgttgagtatgttgatgcaaatgaaattcatgttcgttacgat
agaaatgaagaacaacgtttggtaagctttgaagaagatctgaagatctacaaactcacc
aagttcatcaaaacaaaccaaagtacctgtattaacctgaagcctgctgttaagaaaggc
caggcagtaaaagaaggtgacttcttaactgaaggttatgcagtgaaagatggtgaatta
gcattgggtcgtaacctgaaagtggcgttcatgccttggaaaggttacaacttcgaggat
gccatcgtaatcaacgagaaagttgtgaaagaagatctcttcacatctgtacacgttgaa
gaatacgaattggaagtgcgtgatacgaaattgggtgaagaagaattaacgccggatatt
ccaaacgtaagtgaggaagcaacaaaagacctggatcaaaacggtatcatccgtattggt
gcagcaattaaagaaggcgatatcctcattggtaaaatcactcctaaaggcgaaagcgat
ccaactcctgaagagaagttgttacgtgccatctttggtgataaagccggtgatgcaaaa
gatgcttcattgaaagctccaagtggaactgaaggtgtggtaattgataagaaacttttc
caacgtgccaagaaagataagaatggtaagatccgtgaaaaagcattgttagaaaaagtt
gagaagatccacgagaagaatacaactgacttgttagatgtattgctgagcaaattgtta
tctctgttgcaaacaaaaacttcagcaggtgttaataacaactttggtgaatcattaatt
ggtaaaggtgctaagttcaatcagaagaaccttgcaacaattgactacgcaaacgttaac
ccgttaggctggacaggtgatgcaacaactgatgagtggatcaaccaactgttacacaac
tacaacatcaagtataacgaagaactcggccgttacaagcgtgagaaattcaacatctct
attggtgatgaattaccagctggtgtattgaagcttgctaaagtttacttagctgttaag
cgtaaactaaaagtgggtgataagatggcgggtcgtcacggtaacaaaggtatcgttgcc
aaaatcgttcgccaggaagatatgccgttcctcgaagacggaactcctgttgatattgta
ttgaacccattgggtgtacctagtcgtatgaacctcggacagatctatgaaactgttctt
ggctgggctggtgaaaaactcggtgtgaagttcgcaacaccaatctttgatggtgctaca
gtagaagaaattgcaggacatattgctgatgcaggtttaccattgtttggtcatacattc
ctttatgatggtgaaacaggtgagcgcttccaccagaaggctacagttggtatcatttac
atgatcaaactgcaccacatggttgatgataagatgcacgcccgttcaatcggaccatac
agtttaattactcaacaaccgttgggtggtaaggcacagttcggtggtcagcgtttcggt
gaaatggaggtgtgggcattggaagcatacggtgcttctaacatcctgcaggaattactt
acactcaaatctgatgacatcatgggtcgtgcaaaaacctatgaagccattgtaaaaggt
gataacattcctcgcccgggtattcctgaatcattcaatgtattggttcatgaattaaga
ggcttgggcttagaccttaagtttgaagaataa
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integrated database retrieval system
