Lachnoclostridium sp. YL32: A4V08_06800
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Entry
A4V08_06800 CDS
T04430
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
lacy
Lachnoclostridium sp. YL32
Pathway
lacy03420
Nucleotide excision repair
lacy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lacy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A4V08_06800
03430 Mismatch repair
A4V08_06800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lacy03400
]
A4V08_06800
Enzymes [BR:
lacy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A4V08_06800
DNA repair and recombination proteins [BR:
lacy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
A4V08_06800
MMR (mismatch excision repair)
Other MMR factors
A4V08_06800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
ResIII
AAA_22
AAA_12
AAA_11
AAA_14
DEAD
tRNA-synt_1g
DUF1878
AAA_16
Motif
Other DBs
NCBI-ProteinID:
ANU45570
LinkDB
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Position
complement(1581171..1582997)
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AA seq
608 aa
AA seq
DB search
MAFNDAQKMAIRHREGPMLVLAGPGSGKTTVITNRVRYLTEKAGVDPSHILVITFTRAAA
REMKERYEQITQAGCSRVSFGTFHSVFFLILKLAYRYKAADIVREEQRVQFIKEMLSKCD
LEVEDEGEFISSVLSEISMVKGDIMDMDHYYAKNCSEDMFRQLYRGYEARLRQNRLLDFD
DMLVMCYELFKERKDILSAWQDKYRYILIDEFQDINRIQYEIVKMLALPRNNLFIVGDDD
QSIYRFRGAKPELMLGFERDYPGAGKIFLDTNYRCSRQIVEAAGRVISHNRTRFPKEIRA
ARGKGHPVIIKEWQEPIDETLGIVTEIRGYASMGISYNDMAVLYRTNMGPRLLISKLMEY
NIPFYMRDAVPNLYEHWISGNVISYIRAALGDLSRSNVLQIINRPKRYISRDALEDRQVN
WESVKSFYQDKNWMMDRIEQLEYDLAVLRNMAPAAAVNYIRKAVEYDEYIREYAQSRRMK
PEELFETLDQLQESAAGFKTYEHWFTHMKEYKEQLKKQAAGRDEQRQGVSLMTMHSAKGL
EFRVVYILDANEGVTPHHKAVLDPDVEEERRMFYVAMTRARERLHIYHVKERYRRKQAKS
RFAEEAEG
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atggcatttaacgacgcacaaaaaatggcaatccggcatagggaaggtcccatgctggtt
ttggcaggacccggttccggcaagacgacagtcatcaccaaccgggtccgttatcttacg
gaaaaggcaggcgtggatccctcccatattctggtaattacatttaccagggcagcggcc
agggagatgaaggagcgctatgaacagattacacaggcaggatgcagccgggtttccttt
ggaaccttccattctgtcttttttctgattctcaaactggcttaccggtataaggccgcg
gacattgtaagggaagagcagcgcgttcagttcataaaggaaatgctgtcaaaatgcgat
ttggaggttgaggatgaaggcgagttcatatcctctgtgctcagtgaaatcagcatggtg
aagggcgacatcatggacatggaccactactatgcaaaaaactgctccgaggacatgttc
aggcagctgtaccggggctatgaagcacggctgagacagaaccggctgctggattttgac
gacatgctggtgatgtgctacgagctgtttaaggaaagaaaagatatcctgtccgcatgg
caggacaagtacaggtacatattaatagatgagttccaggacattaaccggattcagtat
gaaatcgtaaaaatgctggcccttcccagaaacaacttgtttattgtgggggatgacgac
cagtccatttaccggttccgcggggcaaagccggagctgatgctgggatttgagcgggat
tatcccggtgcgggaaaaattttcctggataccaattaccgctgcagccgccagattgtg
gaggctgcggggcgggttatctcgcacaacaggacccgttttcccaaggaaatcagggcg
gcaagggggaagggccatccggtcatcataaaggagtggcaggagcccatagacgagacg
ttaggaatcgttacagagatacgcggctatgcctccatgggcatatcctacaatgatatg
gcagtgctctaccggaccaacatgggcccccgtctgctgatttccaagcttatggaatac
aacatacccttttatatgagggatgcggtgcctaatctgtatgaacactggatatccgga
aatgtgatttcctatatccgtgccgccttaggggatttgagccgttccaatgtgcttcaa
atcatcaaccgtcccaagcgctatatcagccgggatgccctggaggaccggcaggttaac
tgggagtcggtgaaatccttttaccaggacaagaactggatgatggaccggattgaacag
ctggaatatgatttggcggtgttgaggaatatggctccggccgcggccgtcaattacatc
cggaaggcagtggagtacgatgagtacatccgggaatacgcccagtccagaaggatgaag
ccggaggagctgtttgagacgctggaccagcttcaggaaagcgcggccggctttaagaca
tatgaacactggttcacccatatgaaggaatataaggaacagcttaaaaaacaggcggca
ggcagggacgaacagcgccagggagtcagcctcatgaccatgcacagcgccaaggggctg
gaattcagggtggtctatatcctggacgccaatgaaggcgttacgccccatcacaaggcg
gttctggacccggatgtggaggaagaacgcaggatgttctatgtggctatgacaagggcc
agggagaggctccatatttatcatgtgaaggagcggtaccgcaggaaacaggcgaaatca
aggtttgcagaggaggcagaaggatga
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