Lactobacillus acidophilus FSI4: SD55_0278
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Entry
SD55_0278 CDS
T03681
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
laf
Lactobacillus acidophilus FSI4
Pathway
laf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
laf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SD55_0278 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
laf03021
]
SD55_0278 (rpoB)
03400 DNA repair and recombination proteins [BR:
laf03400
]
SD55_0278 (rpoB)
Enzymes [BR:
laf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SD55_0278 (rpoB)
Transcription machinery [BR:
laf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SD55_0278 (rpoB)
DNA repair and recombination proteins [BR:
laf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SD55_0278 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AJP45746
LinkDB
All DBs
Position
279364..283005
Genome browser
AA seq
1213 aa
AA seq
DB search
MLNGHVVNYGKHRTRRSFSRIKEVLKLPNLTDVQTESYKWFLDKGIKEVFDDIMPISDFS
GKLSLEYVGYKLQKPKYTVDEARDHDATYAAPMHVTLKLTNQETGEIKTQDVFFGDLPLM
TESGSFIVNGAERVIVSQLVRSPGVYYTGDYDKNGRQIFGTTVIPNRGAWLEYETDAKNV
SYVRVDRTRKLPLTVLIRAMGIGSDSEIIEMFGQSDTLQFTLDKDVHKNPADSRVAEALK
DIYERLRPGEPKTTDSSRSLLYARFFDPRRYDLAPVGRYKINKKLSLKNRLYGQTLAETL
ADPDTGEIIVKKDTVVTHEIMDKLAPYLDRDDFKMVTYQPSKEGVLPDPITVQEIKVYSK
VDPEREVKLMSNGHIDADVKHLTPADVLASINYFFALQDKIGTTDDIDHLGNRRIRRVGE
LLQNQFRIGLARMERVVRERMSIQDPSTVTPQQLINIRPIVASIKEFFGSSQLSQFMDQH
NPLGELTHKRRMSALGPGGLTRDRAGYEVRDVHYTHYGRLCPIETPEGPNIGLINSLASY
AIINKYGFIETPYRRVSWDTHKVTDKIDYLTADEEDNYIIAGANTPLNDDGSFKEDIILA
RQKEDNVEVTPDKIDYMDVIPKQVVSVASACIPFLENDDSNRALMGANQQRQAAPLINPH
SSLVGTGMEYRAAHDSGAALIAKAAGTVEYVDADEIRIRREDGTLDKYTLEKYRRSNNSK
SYNQTPNVKLGDHVDESDVIANGPTMDHGELALGQNPLIAFMTWNMYNYEDAIMLSERLV
KDDVYTSISIEDYESEARDTKLGPEEITRELPNIGEDALKDLDADGIVRVGAEVHDGDIL
VGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVQDVKVYTREAGDELS
PGVNTMVRVYIAQKRKIQVGDKMSGRHGNKGTVAAVMPEEDMPYLPDGTPVDICLNPMGV
PSRMNIGQLLELHLGAAARQLGIHVATPVFDGANENDVWDTVRQAGMDKDGKTVIYDGRT
GEPFHNRVSVGVMHYLKLTHMVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWA
LEAYGAAYTLQEILTYKSDDVVGRVKAYEAIVKGERIPKPGVPESFRVLVKELQSLGLDI
RVLDMDHNEIELRDMDEDSSEHLNIDTLSRMAEEQEKKKLAEETGKSENKEDSNETADKP
VAPADESDGKVSK
NT seq
3642 nt
NT seq
+upstream
nt +downstream
nt
ttgttaaatggacacgtagtgaactacggtaaacatcgaactagacgtagcttctcccga
attaaggaagtattgaagttacctaacttaactgatgttcaaaccgaatcatataagtgg
tttcttgataaaggcattaaagaagtctttgatgacattatgcctattagtgacttctca
ggtaagctttcattagagtatgtaggctacaaacttcaaaagcctaagtatacagttgat
gaagctcgtgatcatgatgcaacttatgctgcaccaatgcatgtaactttgaagcttact
aaccaagaaactggtgaaattaagactcaagatgtattctttggcgatttaccattaatg
actgaatcaggttcattcatagttaatggtgctgaaagagttattgtttctcaattagtt
agatctccaggtgtttactacactggtgattatgataagaatggtcgtcaaatttttggt
actactgttattcctaaccgtggtgcttggcttgaatatgaaactgatgctaaaaatgtt
tcttatgttcgagtagaccgtactcgtaagttgcctcttactgtattgattagagcaatg
ggtattggctcagacagtgaaattattgaaatgtttggtcaaagtgatactttgcaattt
actttggacaaggatgttcataaaaatccagctgactcacgcgtagctgaagctttgaag
gatatttacgaaagacttcgtccaggtgaaccaaagactactgattcatcacgttcactt
ttgtatgctcgtttctttgacccacgtcgttatgacttggcaccagttggacgttacaag
attaacaagaagctttctcttaagaatcgtttgtatggtcaaactttagctgaaacttta
gctgatcctgatactggtgaaattattgttaagaaggatactgtagttactcacgaaatt
atggacaagttagctccataccttgatcgcgatgacttcaagatggtcacttaccaacct
tcaaaagaaggtgtattaccagatcctattacagttcaagaaattaaggtttactcaaag
gtagatcctgaacgtgaagttaaattaatgtcaaatggtcacattgatgcagatgttaag
catttgactccagctgatgttttagcttcaattaattacttctttgctttacaagataag
atcggtactactgatgatatcgaccacttgggtaaccgtcgtattcgtcgtgttggtgaa
cttcttcaaaatcaatttagaattggtttggcaagaatggaacgtgttgttcgcgaaaga
atgtcaatccaagacccatcaactgttaccccacaacaattgattaacattcgtccaatt
gttgcaagtatcaaggaattcttcggttcatcacagctttcacagtttatggaccaacac
aacccattgggtgaattgacacataaacgtcgtatgtcagccttagggcctggtggttta
actcgtgaccgtgccggatatgaagttcgtgacgttcactatactcactatggtcgtttg
tgtcctattgaaactccagaaggacctaacattggtttgattaactcacttgcttcatac
gcaatcattaataagtatggtttcattgaaacaccatatcgtcgtgtttcttgggatacc
cacaaggtaaccgataaaatcgattatttgactgctgatgaagaagataactacattatt
gccggtgctaacactcctttgaatgatgatggttcatttaaagaagacataattttggct
cgtcaaaaggaagataacgtcgaagttactccagataagattgactacatggacgttatc
cctaagcaagttgtttcagtagcttcagcatgtatcccattcctagaaaacgatgactct
aaccgtgctttgatgggtgccaaccagcaacgtcaggctgctcctttgattaacccacac
agttcccttgttggtactggtatggaatatcgtgcagctcacgactcaggtgctgcatta
attgctaaggcagctggtactgttgaatacgttgatgctgatgaaattcgtattagacgt
gaagatggtactttagacaagtacactcttgaaaaataccgtcgttcaaacaactctaag
tcatacaaccaaactcctaatgttaaattgggtgatcacgttgatgaaagtgatgtaatt
gctaatggtccaactatggatcatggtgaacttgcattaggtcaaaacccactcattgct
ttcatgacttggaacatgtacaactatgaagatgccatcatgctttcagaacgtttggtt
aaggatgatgtatatacttcaattagtatcgaagattatgaatcagaagctcgcgatact
aagcttggaccagaagaaattacaagagaacttcctaacatcggtgaagatgctttgaag
gatcttgatgctgatggtatcgttcgtgtcggtgctgaagttcatgatggtgatattttg
gtgggtaaggtaactcctaagggtgtaactgaattatctgctgaagaaagattacttcac
gctatctttggtgaaaaggctcgtgaagttcgtgatacttcacttcgtgtaccacatggt
ggtggcggtatcgttcaagacgttaaggtttatactcgcgaagccggcgatgaactttca
ccaggtgtaaatactatggttcgtgtttacattgcacaaaagagaaagattcaagttggg
gacaagatgtctggtcgtcacggtaacaagggtactgttgctgcagttatgccagaagaa
gatatgccataccttccagatggtactccagtagatatttgtttgaacccaatgggtgtt
ccatcacgtatgaacattggacagcttcttgaattgcacttgggtgctgctgctcgtcaa
ttaggtattcacgtagcaactccagtatttgatggtgctaatgaaaatgatgtttgggat
actgtacgtcaagcgggtatggataaagatggtaagacagttatttatgatggtcgtacc
ggtgaaccattccacaaccgtgtgtcagtaggtgtcatgcactacttgaaacttactcac
atggttgacgacaagatccacgctcgttcaattgggccatactcattggttactcaacaa
cctttgggtggtaaagctcaattcggtggacagcgttttggtgaaatggaagtttgggct
cttgaagcttatggtgcagcttacacattacaagaaattttgacttataagtcagatgat
gttgttggtcgtgtaaaggcatatgaagctattgttaagggcgaaagaattcctaagcca
ggtgtaccagaatcattccgtgttcttgttaaggaactccaatcattaggtttggatatt
cgtgtccttgatatggatcataatgaaattgaacttcgtgatatggatgaggattcaagt
gaacacttgaatatcgatactttgtcacgtatggcagaagaacaagaaaagaagaagtta
gccgaagaaactggaaaatcagagaataaagaagatagtaatgaaactgcagataagcca
gtagctcctgcagatgaatctgacggtaaagtttctaaatag
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integrated database retrieval system
