Lactobacillus amylovorus 30SC: LAC30SC_03335
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Entry
LAC30SC_03335 CDS
T01436
Name
(GenBank) phosphodiesterase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
lai
Lactobacillus amylovorus 30SC
Pathway
lai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LAC30SC_03335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lai03019
]
LAC30SC_03335
Messenger RNA biogenesis [BR:
lai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LAC30SC_03335
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_PNO1_2nd
KH_KhpA-B
KH_NusA_2nd
KH_2
Motif
Other DBs
NCBI-ProteinID:
ADZ06839
UniProt:
F0TDP5
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All DBs
Position
689575..691206
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AA seq
543 aa
AA seq
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MNTIIMIPVATAIVSLLVGTGIGYAIRKHSWEQKAQNAQNDADHILADAKAQVAAAEAEV
NAQKQAAEAVKQSAENTKKEKILEAQEQIRDFRQKTEDELNVKKDNLAREKNRLQQREDT
LDHKTSLLDERETGLTQKEDQLKQQDASLQAKLTEADELVETRRQKLYDVAKLDKEQAKK
IVLDQLSDELVKERAEMIRNSNEEVKAKADHFANQVIVDAIQSSAADTVAETTVSVVDLP
NEEMKGRIIGREGRNIRSFEALTGIDLIIDDTPKVVTLSGFDPIRREIAKRAMERLIKDG
RIHPARIEEMVDKARKEVNDDIYEAGESALMELGIHRMNPELVKTLGRLKYRTSYGQNVL
SHSIEVGKLAGTMAAELGLDEKLAVRAGLLHDIGKAIDHDIEGSHVEIGVELTRKYHEPD
VVVNAIAAHHGDVPKLSFIAELVVAADTISSARPGARSESLENYIRRLTELEKIAKSYQG
VKQAYAIQAGREVRVMVEPDEISDDRTVILARDIRNQVEKELDYPGNIKITVIREKRVVA
IAK
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
atgaatacaataattatgattcccgtcgcaactgccattgtttcacttttggtgggtaca
ggcattggttatgcaattcgtaagcattcttgggaacaaaaggcccagaatgcgcaaaat
gatgcagaccatattttggctgatgctaaagcacaggtagctgccgctgaagcagaagtc
aacgcacagaagcaagcagcagaagctgttaagcaaagtgctgaaaatactaagaaagaa
aagattcttgaagctcaagaacaaattcgtgattttaggcaaaaaaccgaagatgagtta
aatgtcaaaaaggacaacttagctcgggaaaagaaccgtttacaacaacgtgaagatacc
ttagatcataagacttctttgttagatgaaagagaaactggactcacgcaaaaagaagat
caattaaagcagcaagatgctagcttacaggcgaagttaactgaggctgatgaattagtt
gaaaccagacggcaaaaactttatgacgtagctaaattagacaaggaacaagctaaaaag
attgttcttgatcaattatctgatgaattagttaaagaacgggctgaaatgatcagaaac
agcaatgaagaagttaaagctaaagctgatcattttgccaatcaagtcattgttgatgcc
attcaaagcagtgcagcagatactgtagccgagactaccgtatctgttgttgacttgcca
aatgaagaaatgaagggacggattattggtcgtgaaggtcgcaacatccgttcatttgag
gctttaactggaatcgatctaattatcgatgacacaccaaaagttgtcacactgagtggt
ttcgatcctattagacgtgaaattgccaagagagcaatggaacgattaatcaaggatggt
cgaattcacccagctcgcattgaggaaatggttgataaggccagaaaagaagtaaacgac
gatatttacgaagctggtgaaagtgccttgatggaattaggtatccatcgaatgaaccct
gaattggttaagacacttggtcgtttgaagtatcgtacttcatatggacaaaatgttttg
tctcactcaattgaagtcggtaagctagcaggtactatggctgcggaacttggtctagat
gaaaaattagcggttcgcgcgggattattacacgatattggtaaagccatcgatcatgat
atcgaaggttcccacgtagaaattggggttgaattaaccagaaaatatcatgaacccgat
gttgtagttaacgcgattgctgctcaccacggtgatgtgcctaagttatcgtttattgct
gaacttgttgttgcagcagatacgatttcttcagctcgtccaggtgcaagaagcgagagt
ttggaaaattacattagacgtttaactgaactagaaaaaattgctaagagctatcaaggc
gttaagcaagcttatgctattcaagcagggcgtgaagttcgagttatggttgagcctgat
gaaatttcagatgatcgaacagtaattttggcacgtgatatccgtaatcaagtagaaaag
gaactggattatccaggaaatatcaagattaccgttatccgtgaaaaacgtgttgtagca
attgctaaataa
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