Lingula anatina: 106168489
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Entry
106168489 CDS
T04921
Name
(RefSeq) collagen alpha-1(I) chain isoform X1
KO
K08131
collagen type IX alpha
Organism
lak
Lingula anatina
Pathway
lak04512
ECM-receptor interaction
lak04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lak00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
106168489
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
106168489
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
lak00535
]
106168489
Proteoglycans [BR:
lak00535
]
Extracellular matrix (ECM) proteoglycans
Others
106168489
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Laminin_G_3
Laminin_G_2
Cnd2
Motif
Other DBs
NCBI-GeneID:
106168489
NCBI-ProteinID:
XP_013403009
UniProt:
A0A1S3IXT3
LinkDB
All DBs
Position
Unknown
AA seq
1298 aa
AA seq
DB search
MVRLLILVTTLLLQTVEPQSLNEIGLGTPAICPEVRPGEDDLPAFDFISTYGLDSAARLP
GVKTIRGSNEFQKAYRIGRKADFSIPTSALFPHGLPEQFSFISTIRMSSRTRKENWNLIR
VEDLYSNPQFGVRINGRDKTIEFYTLDYAGSVQTLVFKTAAKIFDKRWHKIHMSVTRGTV
RLYVDCQPMEELPLEPRGQIDVNGHIVMGKREEDGAQLNFDLQWMVVHCDHTAPMRDQCT
ELQRPTTPAPNTTTPVPKVNATEPVSTVNETDVEGLSSEFPDPSATTGQYVTPDYIDYDV
TDPFNVTDWMTEIKITMSMTDKNDTDGEDGDSNGDGGPNGDGDGDGVGDGDGDGDGDGHK
DDGDGINGEDTGPEDGQNGRLEGPNGEGGPTRGTLTGGDTEGGPGTDDGPGGPNGEGIPD
RGTLTGGDTEGGRGTDGGPGGPNGEGVPDRGTLIGGYSEGGPGGPGGPNGDPGPGDDYIS
SRITSTHASLFQEFEGESTPPTGEGREPQEKPTPSGQCEVVCPAGPPGYNGSQGEPGPRG
FQGPPGERGEQGQPGEQGFVGEPGLPGKDGKPGEQGPRGEPGIPGTRGAPGVAGPEGPPG
RPGERGEPGLRGADGDPGAPGMKGEQGEEGKRGPQGLVGPPGQVVEGARGPQGEIGPQGL
PGLPGDRGSPGPRGETGMNGETGSPGRDGVDGKDGDRGRQGTKGEKGTPGRDGRDGAPGP
PGPAGTPTETSNVISEIPPPIPGPPGPPGPRGLDGLKGQKGDSGEIGLRGEAGKRGERGE
KGDRGLQGLVGNPGVPGERGEVGRDGNKGEPGQPGPRGVIGVAGPAGPEGERGPIGKPGQ
KGEPGVPGKPGPPGEVKLKDMADLQGAMGPAGPPGPPGKPGTSGDRGLPGPPGYQGPPGK
DGNPGRPGQPGEDGLPGTDGKRGPKGDAGQDGIKGPQGPPGNPGNPGIPGLDGRKGDSGQ
RGSPGQPGAPGKNGVAGSPGPQGLMGLPGQPGAPGQPGPAGPPGPPGPAGEQTLSSDSQV
YQTDTLGYGPPGPPGVAGPTGNTGRPGERGAQGERGPAGNPGAPGIPGLAGTPGPPGQRG
MPGPPGMPGIPGLPAKDSQGRSVSQAEIRQIVIEVLKERLDELKREFQGPPGPQGIGKTG
DRGPPGIQGIPGDPGPRGLRGERGYMGLPGIPGPPGEMGVKGETGEKGDRGLQGEGREGK
QGPPGPRGPQGPPGRSLPGRPGPSGPPGMTGRSGRPGPPGHPGQPGYCNYCNYPGGQSSG
QSSGGIRHAGAETPAQYLIRYQQEQAQLYRQNHKGPQK
NT seq
3897 nt
NT seq
+upstream
nt +downstream
nt
atggttcgattacttatattagtgacaacacttctccttcaaacggtcgagccacagagc
ctcaatgagattggccttggcacccctgctatatgtccagaagtgaggccgggagaagac
gatcttccagccttcgattttatttcaacatacggtttagacagtgcggccagattacca
ggagtaaaaacaatacgcggttccaatgaattccagaaggcttacaggataggtagaaag
gccgattttagcattcctacatcggcattgtttccacatggactgcccgagcagttttcc
ttcataagtacaattcggatgagttctaggacaaggaaagaaaactggaatcttatacgt
gttgaagacctttattccaacccacaatttggtgttagaattaatggacgagacaaaact
atagaattttacactctcgattatgctggatctgtacaaactttagtatttaaaaccgca
gctaagatttttgacaagcgttggcataaaatccatatgagcgttaccagggggacagtt
agactgtatgttgactgccaaccaatggaagagctgcctctagaacctcggggacagatt
gacgtgaacggccatatagttatggggaagagagaggaagacggtgctcagttaaacttt
gatctccaatggatggtcgtacactgtgatcacactgcgccgatgcgagatcagtgcact
gaactccagcggccaaccacccccgcgccaaacacaacgacaccggtcccaaaagtcaat
gccacggagccagttagtaccgtcaatgaaactgatgtggaaggtttgtcgtcagagttc
cccgatcccagtgccaccacgggacaatacgtcacgccagattacatcgactatgacgtc
actgacccttttaatgtcacagactggatgacagagattaaaatcacgatgtcaatgacg
gataagaatgatactgatggcgaggacggtgattccaatggtgatggtggcccaaatggg
gacggagatggagatggtgttggtgacggtgatggcgatggcgatggcgatggccacaaa
gatgatggagatggcataaatggcgaggatactggtcccgaagatggacaaaatggtagg
ctagaggggccaaatggagaaggtggcccaacccgtggtacacttaccggcggtgacact
gagggaggcccgggcactgatgacggtcccgggggtccaaacggagaaggaattccggac
cgtggaacacttaccggcggtgacactgaaggaggccggggcaccgatggcggtcccggg
ggtccaaatggagaaggagttccggaccgtggcacacttattggtggttactctgaggga
ggcccaggcggtcctgggggtccaaatggagaccctgggcctggagatgactatattagt
agtagaattacgtcaacgcacgcgtctctctttcaagagtttgagggagaatccacccca
cccacgggtgaagggagagagcctcaggagaagccgacgcctagcggacagtgcgaggtt
gtgtgcccagcaggtccaccgggctataacggatcacagggagaaccaggaccccgggga
tttcagggaccacccggagagaggggagagcagggtcaacctggagagcaagggtttgtg
ggagaacccggactaccgggcaaggacggtaaacctggagagcaaggtccaagaggagag
ccaggtatacccggaacaaggggagcgccgggtgtcgcgggaccagagggccctccagga
agacccggcgagaggggcgagcctggattgcgcggtgctgacggtgatcctggggcccct
gggatgaagggagagcaaggagaggaaggaaagcgcggtccacagggtttagtaggaccg
ccgggacaagtggtcgaaggagcaagaggacctcagggagagattggaccacaggggttg
cctggtcttccaggtgatagaggcagcccaggaccacgtggagaaacaggaatgaacgga
gaaacgggatcaccaggaagagatggggttgatggaaaggatggagacagaggaagacag
ggaactaagggagaaaagggtaccccaggtcgagatggcagagatggagctcccgggccc
ccagggccagctggcacgcccactgaaaccagcaatgtaatcagtgaaatacctccaccc
atcccgggcccacctggcccccctggtccccgtggactggatggcttgaagggccaaaag
ggtgactctggcgagataggactgcgaggagaggctggcaaaaggggtgaaagaggtgaa
aagggggacagagggttgcaaggtcttgttggaaatcctggagtccctggtgaaagagga
gaagtgggaagggatggaaacaaaggagaaccgggtcagccaggtccccgtggtgtaatt
ggtgtcgcaggtccagcaggtccagagggagaaagaggaccaattggtaaaccaggacag
aagggagaacctggtgtgccgggtaagcctggcccaccaggagaagtaaaacttaaggat
atggcagatctccaaggcgctatgggtccagctgggccaccaggtccccctggtaaacca
ggcacatcaggagacagaggtctgccaggacctcctggatatcagggtcctccaggaaaa
gatggaaatccaggccgaccaggtcaacctggtgaagatggattgcctggtacagatggt
aaacgtggccccaagggcgatgcaggacaagatggaatcaaaggtccacagggacctcct
ggcaatccaggtaatccaggaatcccaggactagatggcagaaagggagattctggacag
aggggtagccctggtcagccaggggcaccaggaaagaatggagtggctggcagcccaggg
ccacaaggcttgatgggattgcctggacagcctggagcacctggacagccaggacctgca
ggtccacctggaccaccaggcccagctggagaacagacccttagtagtgactcccaggtt
tatcagactgataccttaggctatggacccccaggacctccaggtgtagctggtcctact
ggtaacacaggaaggccaggtgaacgtggtgcccagggagagcgaggacccgcaggaaac
cctggagccccaggtatcccagggttggctggaactccaggacccccaggccagaggggt
atgccaggcccccctggaatgccaggaattccaggattgccagccaaagattcccaggga
agaagtgtaagtcaagcagaaatcaggcaaattgtcattgaagtcttgaaagaacgtctc
gatgagttgaaacgtgagttccagggacctccaggtcctcaaggaattggaaaaacagga
gaccgtggacctccaggcattcaaggaatcccaggtgatccaggtcctcgtggtcttaga
ggcgagagaggctacatgggactcccaggcatccctggtcctccgggagaaatgggtgtg
aagggtgagactggtgagaagggtgatagaggtctgcaaggtgaaggcagagaaggaaaa
cagggaccaccaggaccaagaggtccacaaggtcctccaggaaggagtctgccaggtcga
ccaggtccttcaggacctcccggaatgaccggtcgctctggccgtccaggtcccccaggt
catcctggtcagccaggctattgtaactactgtaactaccctggtggtcagagtagtgga
cagagtagtggtgggataagacatgctggggcagagacgcctgcccagtatttaatacgt
tatcagcaagagcaagctcagctatatagacaaaaccacaagggtcctcaaaaatga
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