Lentibacter algarum: LentiSH36_00096
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Entry
LentiSH36_00096 CDS
T09071
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lalg
Lentibacter algarum
Pathway
lalg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lalg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LentiSH36_00096 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lalg03019
]
LentiSH36_00096 (recQ)
03400 DNA repair and recombination proteins [BR:
lalg03400
]
LentiSH36_00096 (recQ)
Enzymes [BR:
lalg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LentiSH36_00096 (recQ)
Messenger RNA biogenesis [BR:
lalg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LentiSH36_00096 (recQ)
DNA repair and recombination proteins [BR:
lalg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LentiSH36_00096 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
Helicase_C
RecQ_Zn_bind
Cas3-like_C_2
Rhodanese
Motif
Other DBs
NCBI-ProteinID:
WIF30587
LinkDB
All DBs
Position
complement(104456..106495)
Genome browser
AA seq
679 aa
AA seq
DB search
MASANALLKSVFGFDAFRPGQEEIVRAVANGESVLAIMPTGGGKSLCYQLPALMGEGLTL
VISPLIALMRDQVSALKQAGVAAGALTSAASEDENQAVIDAARTGELSLLYLAPERLSST
VTRNILRDAGVARIAVDEAHCVSQWGHDFRPDYLRIGELQRYLGVPLAAFTATADNETQG
EIITRLFAGTEPRRFLHGFDRPNISLAFAPKDKPRQQILSYAGARRGQCGIVYCATRAKT
EALAAALRDEGHNACHYHGAMDPDERRRVEHRFNTEDALIVVATIAFGMGVDKPDIRWVA
HADLPKSVEGYYQEIGRAGRDGARAETLTLYGPEDIRLRRAQIDESLAPADRQEADHGRL
NALLGLAEATSCRRQLLLSYFNEASEPCNNCDLCDTPPETFDATEAARMALSAILRSEER
FGAGQIIDILLGKLTDKVRQFGHDALPTFGVGTAYRPAQWQAVLRQLMGHDLIRPDARAH
GALKITRKAHPLLKGKATLTLRKDLVSTATSGPKIKMLVSEEDAPLFSALKAKRRALAEA
ANLPAYIVFNDKTLIEMVKHKPQSLDDFAMIAGVGQKKLEKYGHAFLSVLAEDAPKASPA
RRKLAGKPAGSLFDQLVDAQNTLQRGSCGTQKPLTLTNSQLAKVAQMRPQSLDALERLIG
DKRTERFGPAFIDLIHGGV
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atggcttcggcaaatgcgcttctaaagtccgttttcggctttgacgccttccgccccggg
caggaagagattgtgcgcgctgtggccaacggcgaaagcgtgttggcaatcatgccgacg
ggtggcggcaaatctctctgctaccagctccccgcacttatgggcgaaggcctgaccctt
gtgatttccccgctaatcgcactgatgcgcgatcaggtttccgccctgaaacaagcaggc
gtcgccgctggcgcgctcacatccgctgcaagcgaggacgaaaaccaagctgtgattgat
gccgcccgcaccggcgagctgagcttactttatctcgcgccagagaggctctcctcaacc
gtgacgcgcaatatcctgcgcgacgcaggtgttgcgcgcatcgcggttgacgaagcgcat
tgcgtcagtcagtggggccatgacttccgccccgattatctgcggatcggcgagcttcag
cgctatctcggtgttccccttgccgctttcaccgccacagcagacaacgaaacccaaggc
gaaatcattacccgcctgttcgcaggcacagaaccgcggcggttcttgcacgggtttgac
agaccaaacatcagcctcgccttcgcgcccaaagacaagccgcgccagcagatattgagc
tatgcaggcgcgcggcgtggccaatgtgggattgtctattgcgccacacgtgccaaaaca
gaagcgctggctgctgctctgcgcgacgagggtcacaatgcctgccactaccatggcgca
atggaccctgacgaacgccgccgcgtcgagcaccgcttcaacacagaagatgcactcatc
gttgttgcgaccatcgccttcggcatgggcgtcgacaaacccgacatccgctgggtcgcc
cacgcagatctgcccaaatcggtcgagggctactatcaggaaattggccgtgctggccgc
gatggcgcgcgtgccgaaacgctcacactctatggcccagaagatattcgcctgaggcga
gcccagattgacgaaagtctcgccccagccgatcggcaagaggccgatcatggccgcctc
aacgcgcttctagggctggccgaggccaccagctgtcgccgccaactccttttgtcttat
ttcaacgaggcctcagaaccttgcaacaactgcgacctctgcgacactccccccgagaca
tttgacgccaccgaagccgcgcgcatggcgctctcagcaatcctacgcagtgaagagcgc
tttggtgcaggccaaattatcgacattcttcttggcaaactcacagacaaggtgcgtcag
tttggacatgacgccctgcccacattcggcgtgggaacagcctatcgccccgcacaatgg
caggcggttttacgtcagctcatggggcacgatctaatacgcccagacgcccgagcacat
ggtgcactcaagatcacgcgcaaagcacacccgctgctcaagggaaaagcaactctcacg
cttcgcaaagaccttgtcagcacagcgacaagcggccccaaaatcaagatgctggtgtcc
gaagaagacgcgccactcttttctgccctcaaagccaagcgccgcgcgctcgcagaagct
gccaacctcccagcctatatcgtcttcaatgacaagacgctcatcgagatggtcaagcac
aagccccaatcgcttgatgacttcgccatgattgcaggcgtcggccaaaagaaactcgaa
aaatacggacacgcgtttttgtcagtgctcgccgaagatgcgcccaaagcctcgccagcg
cgccgcaaacttgccggtaaaccagcggggagcctatttgatcagctcgttgacgcccaa
aatacgctccaacgaggcagttgcgggacacaaaaaccactcaccctgacaaattcacag
ctcgcaaaggttgcacaaatgaggccacagtccctagatgcattagagcggctgatcggc
gacaaacgcaccgagcgatttggaccagcctttattgacctgatacatgggggtgtatga
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