Lactobacillus amylovorus GRL 1112: LA2_01515
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Entry
LA2_01515 CDS
T01371
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
lam
Lactobacillus amylovorus GRL 1112
Pathway
lam03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lam00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LA2_01515 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lam03021
]
LA2_01515 (rpoB)
03400 DNA repair and recombination proteins [BR:
lam03400
]
LA2_01515 (rpoB)
Enzymes [BR:
lam01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LA2_01515 (rpoB)
Transcription machinery [BR:
lam03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LA2_01515 (rpoB)
DNA repair and recombination proteins [BR:
lam03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LA2_01515 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
ADQ58296
UniProt:
E4SKN0
LinkDB
All DBs
Position
307112..310753
Genome browser
AA seq
1213 aa
AA seq
DB search
MLNGHVVNYGKHRTRRSFSRIKEVLKLPNLTDVQTESYKWFLDKGIKEVFDDIMPISDFS
GKLSLEYVGYKLQKPKYTVDEARDHDATYAAPMHVTLKLTNQETGEIKTQDVFFGDLPLM
TESGSFIVNGAERVIVSQLVRSPGVYYTGDYDKNGRQIFGTTVIPNRGAWLEYETDAKNV
SFVRVDRTRKLPLTVLIRAMGISSDSDIIDMFGQSDTLQFTLDKDVHKNPADSRVAEALK
DIYERLRPGEPKTTDSSRSLLYARFFDPRRYDLAPVGRYKINKKLSLKNRLYGQTLAETL
ADPDTGEIIAKKDTVVNHEVMDKLAPYLDRDDFKMVTYQPSKEGVLPDPITVQEIKVYSK
VDPEREVKLMSNGHIAADVKHLTPADVLASINYFFALQDKIGTTDDIDHLGNRRIRRVGE
LLQNQFRIGLARMERVVRERMSIQDPSTVTPQQLINIRPIVASIKEFFGSSQLSQFMDQH
NPLGELTHKRRMSALGPGGLTRDRAGYEVRDVHYTHYGRLCPIETPEGPNIGLINSLASY
AIINKYGFIETPYRRVSWDTHKVTDKIDYLTADEEDNYIIAGANTPLNDDGSFKENIILA
RQKEDNVEVTPDKIDYMDVIPKQVVSVASACIPFLENDDSNRALMGANQQRQAAPLINPH
GSLVGTGMEYRAAHDSGAALIAKAAGTVEYVDANEIRIRREDGTLDKYTLEKYRRSNNSK
SYNQTPNVKLGDHVDVSDVIANGPTMDHGELALGQNPLIAFMTWNMYNYEDAIMLSERLV
KDDVYTSISIEDYESEARDTKLGPEEITRELPNIGEDALKDLDADGIVRVGAEVHDGDIL
VGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVQDVKVYTREAGDELS
PGVNTMVRVYIAQKRKIQVGDKMSGRHGNKGTVAAVVPEEDMPYLPDGTPVDICLNPMGV
PSRMNIGQLLELHLGAAARQLGIHVATPVFDGANENDVWDTVRQAGVDKDGKTVIYDGRT
GEPFHNRVSVGVMHYLKLTHMVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWA
LEAYGAAYTLQEILTYKSDDVVGRVRAYEAIVKGERIPKPGVPESFRVLVKELQSLGLDI
RVLDMNHKEIELRDMDGESSEHLNIDTLSRMAEEQEKKKLAEETEKSEDKKDDEKTADKP
AAPADKSDGKVSK
NT seq
3642 nt
NT seq
+upstream
nt +downstream
nt
ttgttaaatggacacgtagtgaactacggtaagcatcgaactagacgcagtttttcccga
attaaggaagtattgaagctgccaaacttgaccgatgttcaaaccgaatcatataagtgg
tttcttgataaaggcattaaagaagtctttgacgacattatgcctattagtgacttctca
ggtaagctttcattagaatatgttggctacaagcttcaaaagcctaagtacacagttgat
gaagctcgtgatcacgatgcaacttatgctgcaccaatgcacgttactttgaagcttact
aaccaagaaactggtgaaattaagactcaagatgtattctttggcgatttaccattgatg
actgaatcaggttcattcatcgttaatggtgctgaaagagttatcgtttctcaattagta
agatctcctggtgtatattacactggcgactacgacaagaacggtcgtcaaatctttggt
actactgttattcctaaccgtggtgcttggcttgaatatgaaactgatgctaagaatgtt
tcatttgttcgtgttgaccgtactcgtaagttgccacttacagttttgattagagcaatg
ggtattagctctgacagtgacattattgatatgtttggtcaaagcgatactttgcaattt
actttggacaaggatgttcacaagaacccagctgactcacgtgtagctgaagctttgaag
gacatttacgaaagacttcgtccaggtgaaccaaagactactgattcatcacgttcattg
ctatatgcccgtttctttgatccacgtcgttacgacttggcaccagttggtcgttacaag
atcaacaagaagctttcacttaagaaccgtttgtacggtcaaactttagctgaaactttg
gctgatccagatactggtgaaatcattgctaaaaaggatactgttgttaaccacgaagta
atggacaagcttgctccataccttgatcgtgatgacttcaagatggtaacttaccaacct
tcaaaggaaggtgtattgccggatcctattactgttcaagaaattaaggtttactcaaag
gttgaccctgaacgtgaagttaagttgatgtctaacggtcatattgctgcagatgttaag
cacttaactccagctgatgttttggcttcaatcaactacttctttgcattgcaagacaag
atcggtactactgatgatatcgaccacttgggtaaccgtcgtattcgtcgtgttggtgaa
cttcttcaaaaccaattcagaattggtttagcaagaatggaacgtgttgttcgtgaaaga
atgtcaatccaagatccatcaactgttactccacaacaattgatcaacattcgtccaatt
gttgcaagtatcaaggaattcttcggttcatcacaactttcacagttcatggaccaacac
aacccattaggtgaattgacccacaagcgtcgtatgtcagctttagggcctggtggtttg
actcgtgaccgtgccggatatgaagttcgtgacgttcactatactcactatggtcgtttg
tgtcctattgaaacacctgaaggtcctaacattggtttgatcaactcacttgcttcatat
gcaatcattaacaagtatggtttcattgaaactccataccgtcgtgtttcttgggatact
cacaaggtaactgacaagatcgactacttgactgctgatgaagaagataactacatcatt
gccggtgctaacactcctttgaatgacgatggttcatttaaggaaaacattattttggct
cgtcaaaaggaagataacgtcgaagttactccagacaagattgactacatggacgttatt
cctaagcaagttgtttcagttgcttcagcatgtattccattccttgaaaacgatgactcc
aaccgtgctttgatgggtgccaaccagcaacgtcaggctgctcctttgatcaacccacat
ggttcacttgttggtactggtatggaatatcgtgcagctcacgattcaggtgccgcttta
attgctaaggctgcaggtactgttgaatacgttgatgccaacgaaatccgtattagacgt
gaagatggcaccttagacaagtacactcttgaaaagtaccgtcgttcaaacaactctaag
tcatacaaccaaactcctaatgttaaattaggtgatcacgttgacgtaagcgatgttatt
gctaacggtccaactatggatcacggcgaacttgctttaggtcaaaacccattgatcgca
tttatgacttggaacatgtataactacgaagatgctatcatgctttcagaacgtttggtt
aaggatgatgtctacacttcaattagtatcgaagactacgaatcagaagctcgtgatact
aagcttggtcctgaagaaatcactagagaattgcctaacattggtgaagatgcattgaag
gatcttgatgccgatggtatcgttcgtgtcggtgcagaagttcacgatggcgacattttg
gtaggtaaggtaactcctaagggtgtaaccgaattatctgctgaagaaagattacttcac
gctatctttggtgaaaaggctcgtgaagttcgtgatacttcacttcgtgtaccacacggt
ggtggcggtatcgttcaagacgttaaggtttatactcgtgaagccggcgacgaactttct
ccaggtgtaaacactatggttcgtgtctacattgcccaaaagagaaagatccaagttggt
gacaagatgtctggtcgtcacggtaacaagggtactgttgccgcagttgttccagaagaa
gatatgccataccttccagatggtactccagtagacatttgtttgaacccaatgggtgtt
ccatcacgtatgaacattggacagcttcttgaattgcacttgggtgctgctgcccgtcaa
ttaggtattcacgttgcaactccagtatttgatggtgcaaacgaaaacgatgtttgggat
actgttcgtcaagctggtgttgataaagacggtaagactgttatttacgatggtcgtacc
ggtgaaccattccacaaccgtgtatcagttggtgtcatgcactacttgaaacttactcac
atggttgacgacaagatccacgctcgttcaatcgggccttactcattggttactcaacaa
cctttgggtggtaaagctcaattcggtggtcagcgtttcggtgaaatggaagtttgggct
cttgaagcttacggtgctgcttacacattacaagaaatcttgacttacaagtcagatgac
gttgttggtcgtgtaagagcatatgaagctatcgttaagggcgaaagaattcctaagcca
ggtgtacctgaatcattccgtgttcttgttaaggaacttcaatcattaggtttggacatt
cgtgttcttgatatgaaccacaaggaaattgaacttcgtgatatggatggagaatcaagt
gaacacttgaatatcgatacattgtcacgcatggcagaagaacaagaaaagaagaagtta
gccgaagaaactgaaaaatcagaagataaaaaagatgacgaaaagactgcagacaagcca
gcagctcctgcagacaaatctgacggtaaagtttctaaatag
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integrated database retrieval system
