KEGG   Labrenzia sp. CP4: ACP90_14460
Entry
ACP90_14460       CDS       T04295                                 
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
lap  Labrenzia sp. CP4
Pathway
lap02024  Quorum sensing
lap03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lap00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    ACP90_14460
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    ACP90_14460
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lap03019]
    ACP90_14460
   03036 Chromosome and associated proteins [BR:lap03036]
    ACP90_14460
Messenger RNA biogenesis [BR:lap03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     ACP90_14460
Chromosome and associated proteins [BR:lap03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    ACP90_14460
SSDB
Motif
Pfam: Hfq Hfq_1 AcMNPV_AC11
Other DBs
NCBI-ProteinID: AMN53432
LinkDB
Position
3101417..3101671
AA seq 84 aa
MAERAQNLQDTFLNHVRKQKTPLTIFLINGVKLQGVVTWFDNFCVLLRRDGHSQLVYKHA
ISTIMPNGPVQLFDQAEENAEKAS
NT seq 255 nt   +upstreamnt  +downstreamnt
atggctgagcgcgcacaaaatctccaagacacttttcttaatcacgttcgcaagcaaaaa
actcctctgacgatttttctgatcaacggtgtgaaattgcagggtgtcgttacctggttc
gacaacttctgcgttctgctgcgtcgtgatgggcattcccagctggtttacaaacacgcg
atttccacaattatgccaaacggacctgttcaactgttcgatcaggctgaggaaaacgct
gaaaaggcaagctga

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