Candidatus Liberibacter americanus: lam_208
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Entry
lam_208 CDS
T02902
Symbol
cafA
Name
(GenBank) Ribonucleases G and E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
lar
Candidatus Liberibacter americanus
Pathway
lar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
lam_208 (cafA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lar03019
]
lam_208 (cafA)
03009 Ribosome biogenesis [BR:
lar03009
]
lam_208 (cafA)
Enzymes [BR:
lar01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
lam_208 (cafA)
Messenger RNA biogenesis [BR:
lar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
lam_208 (cafA)
Ribosome biogenesis [BR:
lar03009
]
Prokaryotic type
rRNA processing factors
lam_208 (cafA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
AAA_11
Motif
Other DBs
NCBI-ProteinID:
AHA27581
UniProt:
U6B6S9
LinkDB
All DBs
Position
249144..251378
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AA seq
744 aa
AA seq
DB search
MANKMLIDASHTEEIRVVVLRDNRVEEIDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLPFPEIHPDYYQIPFSDRQFASKVSNEVHENSDIIENDVSETDVLNNSVNEQ
IEAESMTVDLSIEDETTSENLNNNTISDREEIKNDSFNNEPNKLRRQYCIQEVIKNRQII
LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSRGETISRKIKNPVDRKHLKEIARDLE
VPSGMGVILRTAGASRSKIEIKRDFEYLMRLWDNMRDLALNSVAPHLVYEEGSLIKRSIR
DLYGKDISEIIVSGEKGYLEAKAFMKLLMPSSTKIVQQYYGVHPIFFRSGIEAQLDCLHQ
AEVTLPSKGYIIINQTEALVAIDVNSGRSTRECSIEDTALQTNLEAAEEIARQLRLRDLA
GLIVVDFIDMEDKINNRTVEKKLKESLKRDRARVQVGSISHFGLLEMSRQRIRSSVLEST
TKICATCKGSGYVRSQSSISLSVLRSIEDYLLQSTNYNITVHTHSDVVLYLLNQKRATIF
EYENRFGVAINLVIGVNLENKLFYIEKGSPVQSPVKIGSAVDSLQFQGSENNLNQNDGNI
GSSQDDGSETKNNCSRSSEDMQSENSEKQLVSQDSKELNEGTSSDYRRKRRRRSRRRRSV
VDHCNISATDVLGPVKNVVDDNFINQDVVLFDSDDKKSLPDNSDIDSTNSNDGLTFSETI
AEKDVNSKVSAPIKKLSWWLRRKY
NT seq
2235 nt
NT seq
+upstream
nt +downstream
nt
atggcaaataagatgcttattgatgcttcgcatactgaggaaatacgcgttgttgtcttg
cgagataatcgcgttgaagagattgattttgaatctgaacataagaaacaaatcaaagga
aatatttacctagcgaaggttacacgtgttgaaccttctttacaagcagcttttgtggat
tatggagggaaccgtcatggattcttgccttttcctgagattcatccagattattatcaa
atacccttttcggatcgtcagtttgcctcaaaggtttcgaatgaggttcatgaaaattct
gatattattgaaaatgatgtctcagaaactgatgtgttaaataattctgtaaatgaacaa
atagaagctgaatctatgactgttgatttatctatagaagatgaaactacaagtgaaaat
ttaaataataatacgatatctgatcgtgaagagattaaaaatgattctttcaataatgaa
cccaataaattgcgaagacagtattgtattcaggaagttataaaaaatcgccagattata
ttagttcaaattgttaaagaagagcgtggtaataaaggtgctgctgttactacatattta
tctttggctggaagatattctgtattaatgcctaatacatctcgaggagagactatttcg
aggaaaataaagaatcctgttgacagaaaacatctaaaagaaattgcgcgtgatcttgaa
gttccttcgggaatgggtgtgattttgcgtacagctggcgcatctcgttctaaaattgaa
ataaaacgtgattttgagtatttgatgcgtctttgggataatatgcgtgatcttgcatta
aattctgttgctcctcatttggtttatgaagagggaagtttaattaagagatcaattaga
gatctttatggcaaagatatatccgaaattattgtttctggtgaaaaaggataccttgag
gcaaaggctttcatgaaactattaatgcctagttctactaagatagttcagcaatattat
ggagtacatccaatcttcttccgttctggtattgaagctcaattagattgtttgcatcaa
gcagaggttacactaccatctaaaggatatattattattaatcagaccgaagcacttgtt
gctatcgatgttaattcaggtcgttcaacacgagaatgttctatagaagatactgctctt
caaaccaacttagaagcagctgaagaaattgcacgtcagcttcgtttgcgtgatttagcg
ggtttaatagttgttgattttatagatatggaagataagataaataatcgtactgtcgaa
aagaagctaaaggagagtttaaaaagggatagagcgcgtgtccaagttggttctatatct
cattttggacttttggaaatgtctaggcaacgtattagatcttctgttttagaaagcact
acaaaaatttgcgctacttgtaagggatctgggtatgtacgttctcaatcttctatatca
ttgagtgttttaaggagcatagaagattatttattacaatctacgaattataatattact
gttcatacgcattcagatgttgttttatatttgctaaatcagaaacgtgctacaatcttt
gaatatgagaatagatttggtgttgcaattaatttggtaattggtgttaatctagaaaat
aagcttttttacattgaaaaaggatctcccgttcagtctccagttaaaattggatctgca
gttgattcattgcaatttcaaggctcagaaaataatttgaatcaaaatgatggaaatatc
ggatcttctcaagatgatggcagtgagacaaaaaataattgctctcgatcatcagaggat
atgcaaagtgaaaattcagaaaaacagttagtttctcaagattcaaaagagttgaatgaa
ggtacttcttctgattataggagaaagagaaggcgtcgtagtagacgtaggcgttctgtg
gttgatcattgtaatatatctgctactgatgttttgggacctgttaaaaatgtagttgat
gataattttataaatcaagatgttgtattatttgatagtgacgataaaaaatctttgcct
gataattctgatattgattctacaaactctaatgatggattaactttttctgagacgatt
gctgagaaagatgttaattctaaggtatctgctcctattaagaaattgagttggtggcta
cgtcgtaaatattag
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