Candidatus Liberibacter asiaticus Ishi-1: CGUJ_00610
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Entry
CGUJ_00610 CDS
T03607
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
lat
Candidatus Liberibacter asiaticus Ishi-1
Pathway
lat03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lat00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CGUJ_00610 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lat03021
]
CGUJ_00610 (rpoA)
03400 DNA repair and recombination proteins [BR:
lat03400
]
CGUJ_00610 (rpoA)
Enzymes [BR:
lat01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CGUJ_00610 (rpoA)
Transcription machinery [BR:
lat03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CGUJ_00610 (rpoA)
DNA repair and recombination proteins [BR:
lat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CGUJ_00610 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
DUF211
HHH_XRCC3_RpoA
Motif
Other DBs
NCBI-ProteinID:
BAP25996
LinkDB
All DBs
Position
complement(121914..122969)
Genome browser
AA seq
351 aa
AA seq
DB search
MVVGDFKKVGIMIQKNWQELIKPNNIEYIVLGQEEENRTLMIAEPLPRGFAHTLGNALRR
VLMSSLRGAAITAVQIDGVLHEISSIKGVHEDLTDIILNIKGINLKMSGDSHKRVTIFKR
GPGVVTAGDIQTVNDIEVLNPDHVICNLDVDAVVRMELTVSKGHGYVPAKHHRTENDPIG
LITIDALYSPIKKVSYTVESAREGQVLDYDKLSMTIDTDGSITGEDSVALASRILQDQLG
MFINFEEPKKEVKEDINVKSLPFNPALLKKVEELELSVRSTNCLRGENIVYMGDLIQRTE
ADMLRMANFGRKSLVEIKGVLGTMGLFLGMNLPDWPPESIEELAKKYEDKC
NT seq
1056 nt
NT seq
+upstream
nt +downstream
nt
ttggttgttggtgattttaaaaaggttggtattatgatccaaaaaaattggcaagagttg
attaagccgaataatattgaatatatagtccttggacaagaagaagaaaataggactttg
atgatagcagaacctcttccccgtggtttcgctcatactcttgggaatgcacttcgtcgt
gtgttaatgtcttcgttgcgtggtgctgcaataactgctgttcaaattgatggtgtattg
catgagatttcttctatcaaaggagtgcacgaagatctgacggatattattctgaatatc
aagggtattaacctgaaaatgtctggtgattcgcataagcgggtaactatcttcaagcgt
gggcctggagttgttactgcaggtgatatacagactgttaatgatattgaggtgcttaat
ccagatcatgttatttgtaatcttgatgtagatgcggtggttcgtatggaactcacggtt
tctaagggacatggttatgtccccgctaaacatcataggacggaaaatgatccaattggt
ttgattacgattgatgctttatattctcctatcaaaaaggtttcttatacggtggaaagt
gcgcgtgaagggcaggttcttgattatgataaattgagtatgacgattgatactgatggt
tctattactggagaagattcggttgctttggcatcacgtattttacaagatcaattgggg
atgtttattaattttgaagaacccaaaaaggaagtaaaagaagacataaatgttaagtct
cttccttttaatcctgctcttttgaaaaaagttgaagaattagaactttctgttaggtct
actaactgtttaagaggtgagaatattgtttatatgggagatttgattcaaagaaccgaa
gccgacatgttgcgtatggccaattttggacgtaaatctcttgtcgaaattaaaggagtg
ttaggaactatgggattatttctcggcatgaatttgccggactggcctcctgaaagtata
gaagagttagcgaaaaaatatgaagataagtgctaa
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