Loxodonta africana (African savanna elephant): 100656328
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Entry
100656328 CDS
T04351
Symbol
CNOT1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X4
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
lav
Loxodonta africana (African savanna elephant)
Pathway
lav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100656328 (CNOT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lav03019
]
100656328 (CNOT1)
Messenger RNA biogenesis [BR:
lav03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100656328 (CNOT1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
100656328 (CNOT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
100656328
NCBI-ProteinID:
XP_003417076
LinkDB
All DBs
Position
Unknown
AA seq
2376 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPAPHLFAQLSKVLK
LSKVQEVIFGLALLNSSSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYSEKRDILMDRIL
PDSGGVAKTMMESSLADFMQEVGYGFCASIEECRNIIMQFGVREVTAAQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSDGAQAHTWNVEVLIDVLKELNPSLNFKEVTYE
LDHPGFQIRDSKGLHNVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLINPEIFC
FADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDPLGGMASL
SIGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTPNQTTAFSGIGGLSSQLPVGG
LGTGSLTGIGTGALGLPAVNNDPFVQRKLGTSGLNQPTFQQSKMKPSDLSQVWPEANQHF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDR
FKNRLKDYPQYCQHLASISHFMQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQA
QAQAQVPAKAPLAGQVSTMVTTSTTTTVAKTVTVTRPTGVSFKKDVPPSINTTNIDTLLV
ATDQTERIVEPPENIQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVS
IEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLG
MITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSVVFRPPNPWTM
AIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNLDEQLSAPK
KDVKQPEELPPITTTTTSTTPATSTTCTATVPPQPQYSYHDINVYSLAGLAPHITLNPTI
PLFQTHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRIA
AHHMMRNLTAGMAMITCREPLLMSISTNLKNSFASALRTASPQQREMMDQAAAQLAQDNC
ELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLK
VGGVDPKQLAVYEEFARNVPGFLPTNDLSQPTGFLAQPMKQAWATDDVAQIYDKCITELE
QHLHAIPPTLAMNPQAQALRSLLEVVVLSRNSRDAIAALGLLQKAVEGLLDATSGADADL
LLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQ
QYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEADLFHTIETLMRINAHSRG
NAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWV
NLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQHN
PAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLLQDHDV
RQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLE
LISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYKGTLRVLL
VLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEINI
APRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNDPGNRYNLQLINALVL
YVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSH
THYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWNH
EFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7131 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccagcaggaaatacagcatattgtgaatcggcacggt
cctgaggcagacaggcatttattacgctgcctattttcgcatgtggatttcagtggcgat
ggtaaaagcagtggcaaagatttccatcagactcagtttctgattcaggagtgcgcgtcg
ctgattacaaagccaaattttatctcgacgctgtcctatgccattgataatccattgcac
tatcagaagagtttaaagcctgcaccccacttatttgcccagctgagtaaagttctcaag
ttaagcaaagtacaagaggtaatttttggccttgccctcttgaattcttccagctcagat
ctcagaggtttcgccgcccagtttatcaaacagaagcttccagatcttctgcgttcttat
attgacgcagacgtcagtggaaatcaagaaggtggcttccaagatatagcaatagaggtc
ctacacctcctcctctcccatctcctctttgggcagaagggagcctttggagttggacag
gagcagatagacgcttttcttaagacactgcgcagagattttccccaggaacgctgtccc
gtggtgcttgcaccacttttatactctgaaaaacgggacattctaatggacaggatcctg
cctgattctggaggggtagctaaaaccatgatggagagctctctggctgacttcatgcaa
gaagtaggctatggcttttgtgcaagtattgaagaatgtcgcaatataatcatgcagttt
ggtgttcgggaggtcacagctgcccaagttgcaagggttttgggaatgatggctcgaact
cattcaggattaacagatggtattccgttacaaagtatctctgctcctggcagtgggatc
tggagtgatgggaaagataaaagcgatggagcacaggcacacacatggaatgtagaagtc
ttgattgacgttctcaaagaactgaacccgagtttgaatttcaaggaagtaacttatgaa
ctggaccatcctggatttcaaattcgtgacagtaaaggacttcataatgtggtttatggc
attcaaagaggcctgggaatggaagtgttcccagtagacctcatatatagaccttggaaa
cacgcggaaggccagctctccttcattcaacattcccttataaacccagagatcttctgt
tttgctgactatccctgtcatactgttgccactgatattctgaaagcaccaccggaggac
gacaatcgagaaattgccacatggaagagcttggatttgattgaatctctgctgaggctt
gcagaggtgggacagtatgagcaagtcaaacagctcttcagcttccctatcaaacactgt
ccagatatgctggtattggccttactacaaatcagcacttcctggcacaccttgcgccac
gaactcatctctactctgatgccaattttcctcggaaaccaccccaactctgctattatt
ttacactatgcatggcacgggcaggggcagtctccctcaattcgccaacttatcatgcat
gcaatggcagaatggtacatgcgaggggagcagtatgaccaggccaaattgtctcgaata
cttgatgtggcccaggacttgaaggccttgtcaatgctgctaaatggtactccatttgcc
tttgttattgaccttgctgcgcttgcttcacgtcgtgaatacctcaaacttgacaagtgg
ctcacagataaaattagagagcatggggagccctttatccaggcatgtatgaccttttta
aagagaaggtgcccttctattttgggtggacttgccccagagaaagatcagcccaaaagt
gctcaacttcctccagaaactctggcgacaatgttggcctgtctacaagcttgtgcaggg
agtgtttctcaggagttatcagaaaccatcctcaccatggtagccaattgcagtaatgtt
atgaacaaggccagacagcctccacctggagttatgccaaaaggacgccctcccagtgct
agcagcttagatgctatttctcctgttcagattgatcctcttggtggaatggcatctctt
agtataggtggttcagctgccccccatacccagagtatgcagggttttcctccaaatttg
ggttctgccttcagtacccctcagtcaccagcaaaagcatttccacccctttctacccca
aaccagacaacagcattcagtggtattggaggactgtcatcacagcttccagtaggtggt
cttggcacaggcagcctgactggtataggaactggggctcttggactccctgcagtgaat
aacgacccttttgtacagagaaaactgggcacctctggactgaaccagcctacattccag
cagagtaagatgaaaccttcggacttgtctcaggtgtggccagaggcaaatcagcacttt
agtaaagagatagatgatgaagcaaacagctatttccagcgaatatataatcacccacca
cacccaaccatgtctgttgatgaggtattagaaatgctacagagatttaaagactctact
ataaaaagagaacgagaagtatttaactgtatgctgaggaacctgtttgaagaatatcgg
tttttcccccagtaccctgataaggagttacacataacagcttgcctatttggaggaata
atcgaaaaaggactggtcacatacatggccctaggtctggccctgcgatatgtccttgaa
gccttacgcaagccttttggatccaaaatgtattatttcgggattgctgctttagataga
tttaaaaatagattgaaggactatccccagtattgtcagcacttggcttctatcagtcac
tttatgcaattcccacatcatttacaggagtatatcgaatatggacagcagtctagagat
cctcctgtgaaaatgcagggttccatcacaacccctggaagtattgcactggctcaggcc
caggctcaggcccaggttccagcaaaagctcctcttgccggtcaggttagcactatggta
accacctcaacaaccaccactgttgctaaaacggttacagtcaccaggccaaccggagtc
agctttaagaaagatgtgccaccttcgattaatactacaaatatagatacattgcttgtg
gccacagatcaaactgagagaattgtggagccaccagaaaatatccaagagaaaattgct
tttatcttcaacaatctctcacaatcaaacatgacacaaaaggttgaagagctaaaggaa
actgtgaaggaagaatttatgccttgggtttcacaatacctggttatgaagagagtcagt
attgagccaaactttcacagcctgtattcaaacttccttgacacgctgaagaatcctgaa
tttaacaagatggttttgaatgagacctacagaaacatcaaagtgctcctgacatctgat
aaagctgcagccaacttctcagatcgttctttgctgaagaacttgggacattggcttgga
atgatcacactagctaaaaataaacccatcctacacactgacttggatgtaaaatctttg
ctgctagaggcttatgttaaaggacagcaagaattgctctatgtagtgccctttgttgcc
aaagttttagagtctagcattcgtagtgtggtgttcaggccaccaaacccctggacaatg
gcaattatgaatgtattagctgaactacatcaggaacatgacttaaagttgaacttgaag
ttcgagatcgaggtcctctgtaagaaccttgcattagacatcaatgaactaaaacctggc
aacctcctgaaggataaagatcgcctaaagaacttggatgaacagctctctgctccaaag
aaagatgtcaagcagccagaagaacttcctcccatcacaaccacaacaacttctacaaca
ccagctaccagcaccacctgtacagccactgttccaccacagccacagtatagctaccat
gacatcaatgtgtattccctcgcaggcctggcaccgcacattactctaaacccaacgatt
ccattgttccagacccatccacagttaaagcagtgtgttcgtcaagcaattgaacgggct
gtgcaagagctggtccatcctgtggtggataggtcaattaagattgccatgactacttgt
gagcaaatagtcaggaaggattttgccctggattctgaggaatcccgaatgcgaatagca
gcccatcatatgatgcggaacctgacggctgggatggccatgattacttgcagggaacct
ttgcttatgagcatatccaccaacctgaagaacagttttgcctcggcccttcgcactgca
tccccacagcaaagggaaatgatggatcaggcggctgctcagttagctcaggacaattgt
gaattagcttgctgttttattcagaagactgcagtagaaaaagcaggccctgagatggac
aagagattagcaactgaatttgagctgagaaaacatgccaggcaagaagggcgaaggtac
tgtgatcctgttgtattaacataccaagctgagcggatgccagagcaaatcagactgaaa
gttggtggtgtggacccaaaacagctggctgtttatgaagagtttgcacgcaatgtgcct
ggctttttgcctacaaatgacttaagtcagcccacaggatttttagctcagcccatgaag
caagcttgggcaacagatgatgtagctcagatttatgataagtgcattacagaattggag
cagcatctacacgccatcccaccaactttggctatgaatcctcaagctcaagctcttcga
agtcttttggaggttgtagtattatctcgaaactctcgggatgccatagctgctcttgga
ttgcttcagaaggctgtagagggcctgctagatgctacgagtggtgctgatgctgaccta
ctgctgcgttacagggagtgccacctcttggtcctaaaagctctgcaggatggccgggca
tatggatctccatggtgtaacaaacagatcacaaggtgcctaattgagtgtcgggatgaa
tataaatataatgtggaggctgtggagttgctgattcggaatcatctggttaatatgcag
cagtatgaccttcacctagctcagtcaatggagaatggtttaaactacatggcggtggca
tttgctatgcaattggtaaaaatcctgctggtggatgaaaggagtgttgcccatgttact
gaggcagatctgttccacaccatcgaaacccttatgaggattaatgctcactccagaggc
aatgctccagaaggattgccccagctgatggaagtagtgcgatccaactatgaagcaatg
attgatcgtgctcatggagggcctaactttatgatgcattctgggatctctcaagcctca
gagtacgatgatcctccaggcctgagggaaaaggcagagtatcttctaagggaatgggtg
aatctctaccattcagcagcagctggccgtgacagtaccaaagctttctctgcgtttgtt
ggacagatgcaccagcaaggaatcctgaagactgatgacctcataacaaggttctttcgt
ctgtgtacagaaatgtgtgttgaaatcagttaccgcgctcaggctgagcagcagcacaat
cctgctgccaatcccaccatgatccgagccaagtgctatcacaacctggatgcctttgtc
cgactcattgcactgctagtgaagcactcaggggaggccaccaacactgtcacaaagatc
aatctgctgaacaaggttcttggtatagtagtgggagttcttctacaggatcatgatgtt
cggcaaagtgaatttcagcagcttccctaccatcgaatctttattatgctgctcttggaa
ctcaatgcaccggagcatgttttggaaaccattaatttccagacacttacagctttctgc
aatacattccacatcttgaggcctacaaaagctcctggttttgtgtatgcctggcttgaa
ctaatctcccaccggatatttattgcgagaatgctagcacatacaccacagcagaaggga
tggcctatgtatgcacagctactgattgatttattcaaatatttagcacctttccttaga
aatgtggaactcaccaaacctatgcaaatcctctataagggcactttaagagtgctgctg
gttcttctgcatgatttcccagagttcctttgtgattaccattatgggttctgtgatgtg
atcccacctaattgtatccagctaagaaatctgatcctgagtgccttcccaagaaacatg
aggctcccagacccattcactcctaatctgaaggtggacatgttgagtgaaattaacatt
gcacctcggattctcaccaatttcactggagtgatgccacctcagttcaaaaaggacttg
gactcctatcttaaaactcgatcgccggtcacttttctgtcggatttgcgcagcaaccta
caggtatccaatgatcctggcaatcgctacaacctccagctcatcaatgcactggtgctc
tatgtagggactcaggccattgcacacattcataacaagggcagtacgccttctatgagc
acgatcacccactcggcacacatggatatcttccagaacctggctgtggacttggacact
gaaggtcggtatctcttcttgaatgcaattgcgaatcagctacggtacccaaatagtcac
acacattacttcagctgcaccatgctgtacctttttgcagaggccaacactgaagctatc
caggaacagatcacaagggttctcttggaacggttgattgtaaataggccacatccttgg
ggtcttctcattactttcattgagctgattaaaaatccagcgtttaagttctggaaccac
gagtttgtacactgtgccccagaaattgaaaagttattccagtcggtcgcacagtgctgt
atgggacagaagcaagctcagcaagtaatggaagggacaggtgccagttag
DBGET
integrated database retrieval system
