Lactobacillus sp. wkB8: LACWKB8_0653
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Entry
LACWKB8_0653 CDS
T03355
Name
(GenBank) Hydrolase (HAD superfamily)
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
law
Lactobacillus sp. wkB8
Pathway
law03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
law00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LACWKB8_0653
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
law03019
]
LACWKB8_0653
Messenger RNA biogenesis [BR:
law03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LACWKB8_0653
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_PNO1_2nd
KH_KhpA-B
KH_2
ZapG-like
KH_NusA_2nd
V_ATPase_I
Motif
Other DBs
NCBI-ProteinID:
AIS08927
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Position
632525..634156
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AA seq
543 aa
AA seq
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MTSKFLIPVAIAIISIILGIVIGYVIRKSAWEKKARNAQNDADHILSEAKARVDAAKAEV
NAQKQAADAIKQSAQNTKKEKILEAQEQIQDYRQKVEDELNDKRDTIARDQNRLTQREDT
LDHKNSLLKEKEDDLAKKDEQLEKKQTELTTKLQKADELVEQTTQKLYEVAHLDKEQAKK
LVLNQLADELVKERAEMISNSNEEVKAKADHYARKIIIDAIQSSSADTVAETTVSVVDLP
NEEMKGRIIGREGRNIRSFEALTGVDLIIDDTPKVVTLSGFDAIRREIAKRAMERLIKDG
RIHPARIEETVDKARKEVNDDIYEAGESALMELGIHKMNPELVKILGRLKYRTSYGQNVL
GHSIEVAKLAGTMAAELGLNEKLAVRAGLLHDIGKAVDHDIEGSHVEIGVELTRKYHEPD
VVVNAIAAHHGDVPKLSFIAELVVAADTISSARPGARSESLENYIRRLTDLEQIANRYDG
VKQAYAIQAGREVRVMVEPDKISDDRITVLARDIRNQIEKELDYPGNIKITVIREKRAVS
IAK
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
atgacaagtaaatttttgattcccgtcgcgattgctattatttcaattatattaggcata
gttattggttatgttatccgtaaaagtgcttgggagaaaaaagctcggaacgcccaaaac
gatgccgatcatattttaagcgaagctaaagcacgagttgatgctgcaaaagctgaagtc
aatgcacagaagcaagcggctgatgctataaaacaaagtgcacaaaacacaaagaaagaa
aagattcttgaagcgcaagagcaaattcaggattaccgacaaaaagttgaagatgaatta
aacgataagcgtgatacgattgcgcgtgatcaaaatcgtttaacacaaagagaggatact
ctcgatcataagaactctttgctaaaagaaaaagaggacgatttagctaaaaaagacgaa
cagctagaaaaaaagcaaactgaattaaccactaaattacaaaaagctgatgaattagtt
gaacagactacgcaaaagctttatgaagtagcccatttagacaaggaacaggctaaaaag
ctggttctaaatcaattagcagatgagctagttaaagagcgggctgaaatgattagcaac
agcaatgaagaagtaaaagcaaaggctgatcattatgctcgtaaaataattattgatgct
attcaaagcagctcggctgatacagtggctgaaaccacagtatcagtggtagatttacct
aatgaagaaatgaagggtcgaattattggtcgtgaaggacgcaatattagatcatttgaa
gcactcacaggagtagatttaataattgatgatactcctaaagttgtaactctaagcggt
tttgatgcgattaggcgtgaaattgctaaaagggcaatggaacgcctgattaaagacgga
cgaattcatccggctagaattgaagagacagttgataaggctcgtaaagaagttaatgat
gacatttacgaagcgggcgaaagcgctctaatggagttagggattcataaaatgaatcct
gagttggttaaaatattgggtaggctcaaataccggacatcttatggtcaaaatgtattg
ggacactcaattgaagttgcaaagttagctggaacaatggctgcggagcttggattaaat
gaaaaattagcggttcgcgcgggattattacacgatattggaaaagcagtcgaccatgat
attgaaggttcacacgtagaaataggtgtggaattgacaagaaaatatcatgagccggat
gtggttgttaatgcaattgcggcgcatcacggggatgtgcctaagttatcatttattgct
gaattggtagtggcagcagatacgatttcttctgcaagacctggtgccagaagtgaaagt
ttggagaattacattagaagactgactgaccttgagcaaatagcaaataggtatgatgga
gttaaacaggcatacgctattcaagctgggcgagaagtacgggtgatggttgaacccgat
aagatttcagacgatcgcattacagttttagcacgtgatattcgtaatcagattgaaaaa
gaacttgattacccaggtaatattaaaataacagttattcgtgaaaaacgtgctgtatca
attgcaaaataa
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