Lycium barbarum (goji berry): 132645753
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Entry
132645753 CDS
T09483
Name
(RefSeq) uncharacterized protein LOC132645753 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132645753
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbb03019
]
132645753
Messenger RNA biogenesis [BR:
lbb03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
132645753
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
132645753
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
132645753
NCBI-ProteinID:
XP_060218916
LinkDB
All DBs
Position
6:complement(116807921..116838495)
Genome browser
AA seq
2412 aa
AA seq
DB search
MIPFGSTVASQIRFLLHSLNGSNSDTVSHELRQYLAYGVEGSILLLRTCIDHLNVYGKDL
KNTKLDPVFASIFRCILDKPNFSTVFSESLKDTAISEEFLVNLSNDFDLEISEKIGIGLA
LSDSENVDVRKFGTNYCMGQIAELCSTNSSLDDVKRIQDVLLFLDQSEGLSKHVDLFMHM
LSLVQSKEAQFVLTPLLSDELREANILRNLDFLNDDGEDDFDALVAEMEKEMSIADIMNE
LGYGCTATILQCKEMLSLFLPLTEVTVARILGMVVRTRSGIEDNLNVFSTFRAALGSSTA
SDPSPLSSWNADVLIDAIKQLAPGLNWVTVMENLDHEGFYIPDGAAFSFLMSIYKHSCQD
PFPLGAICGSIWKNAEGQLSLLKYAVSVPPEVFTFAHSGRQLEYVDAVNDHKIQIGHANH
AWLCLDLLEVLCQLAERGYASSVRSILEHPLKHCPEVLLLGMAHINTAYNLLQHEVSAAA
FPVMLKNAAASGMILHLWHVNPSILCWGLVQALNVDLDNMHKVLDACQELKILSSVLDRI
PYVFGIRLAALASHKELMDLDKWLSNNLNTYKDIFYEECLKFLREVHLSTQAQDVASSRF
DPPNALWTIYSETSSTFLKVLKSHSDLVSSRHLAEELDKLQITYMDANSRLKSVGGADSS
TSEDIEAEANIYFHQMFSGQLTNDATVQMLARFKESTEKREQAIFECMIGNLFEEYKFLS
KYPERQLKIAAVLFGSLIKNQLVTHLALGIALRAVLDALRKPADSKMFVFGIMALEQFVD
RLIEWPQYCNHILQISHLRATHSELVAFIERALARISHAESEVGHSPPVDQFHGTIPSSS
MNTEVSTFPVAGQGGLRQNTQGSSSNQLPQRQQSSLEERKPSAALSSYLKPVLSPAVQPV
AVPSSDNAGIQKPQGPGSTSAVLTSSPGFLRPSRSVTSARFGSALNIETLVAAAERREKP
IEAPASEIQDKISFIINNLSAANIEAKAKEFTGILEEQYYPWFAQYMVMKRASIEPNFHD
LYLKFLDKANSKALYKEIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKITIGRN
QVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMGILGLLAEI
YAMPNLKMNLKFDIEVLFKNLGVDLKEVVPTSLLKDRVREVEGNPDFSNKDAGSSQPQMV
ADVKSGIISSLNQVELPLEVASPHPSGPSRILTQYAAPLHLPSAAMTEDEKLAALGLSDQ
LPSAQGLLQGQSPFSVSQLPAAASNIEQQVVVNPKLHALGLQLHFQSVLPIAMDRAIKEI
VSSIVQRSVSIATQTTKELVLKDYAMESDETRIRNAAHLMVASLSGSLAHVTCKEPLRGS
ISGQLRTLLQGLSIASELLEQAVQLVTNDNLDLGCAMIEQAATEKAIQTIDGEIAQQLNI
RRKHREGVGPTFFDASLYTQGHMGGLPEALRPKPGRLSHSQQRVYEDFVRLPWQNQSSQS
ANAVPAAPSTSSGSGGVSRAYMSGTGQMNPNLYSSGLVNAGISAVPQPLEISEEIDTSSQ
LNSASSPHLGMGDTVTSNSFETEAIVEPFTSVSAPELHPVEPSSVAKESGASLQPSNATA
TSERAGNSISEPLLTTGDALDKYQIISEKLESLVSEEAKEAEIQALLLEVPAIILKCISR
DEAALAVAQKAFKGLYENASNSAHVGAHLAILASIRDVSKLFVKELTSWVIYSDEERKFN
KDITVGLIRSELLNLAEYNVHMAKLLDAGRNKCATEFAISLIQTLVISDSRVISELQNLV
DVLAKIAARPGSPESLQQLVEIAKNPAANAAALSSVTFGKDDSNKQSRDKKIAVTATGTR
DDYGAPEYVEPDPAGFREQVSMLFAEWYRICEIPGANDATHAHYILQLNQSGLLKGDETS
DRFFRRLTELSVSHCLSSEVISSTPQSHQVQPLSFLAIDIYAKLVFSILKFYPVDQGSSK
LLLLPKVLAVTVKFIQKDAEEKKMTFNPRPYFRLFINWLVDLSSLDPVFDGANFQVLTAL
ANAFHALQPLKVPGFSFAWLELVSHRSFMPKLLAGNAQKGWPYFQRLLVDLFQFMEPFLR
NAELGEPVQFLYKGTLRVLLVLLHDFPEFLCDYHFSFCDVIPPSCIQMRNIILSAFPRNM
RLPDPSTPNLKIDLLAEISQSPRILSEVDAALKSKQMKGDVDEYLKTRQQGSPFLSELKQ
KLLLLPSEAAKAGTRYNVPLINSLVLYVGMQAIQQLQAKTPHAQSMPSSVPFAVFLVGAA
LDVFQTLIMDLDTEGRYLFLNAVANQLRYPNNHTHYFSFILLYLFAESNQEMIQEQITRV
LLERLIVNRPHPWGLLITFIELIKNPRYNFWSRPFTRCAPEIEKLFESVSRSCGGPKPVD
ENVVSGGIPDIH
NT seq
7239 nt
NT seq
+upstream
nt +downstream
nt
atgattccattcggctccactgttgcttcgcagattcggtttctgctccacagcttgaac
ggttccaactctgacactgtttcccatgagcttcgtcagtatctggcatatggagttgaa
gggagcatattgctgcttcggacctgcattgatcatctgaatgtttatgggaaagacttg
aagaatacaaagttggatcctgtttttgcttccattttcagatgcatcctagacaagcca
aatttcagcactgttttttctgaatccctcaaggatactgcaatcagtgaggagttttta
gtgaatctatcaaatgattttgacttggaaatatctgaaaaaatcggaattggccttgca
ttgtcagactcagaaaatgttgatgtcaggaaatttggaaccaattattgcatgggtcag
attgcggaattatgttccaccaactcttctttagatgatgtcaagcgaattcaggatgtt
cttttgtttctggatcaatctgaaggcctctctaagcatgtagacttgtttatgcatatg
ttatcgctcgtccagtcaaaagaagcccagttcgttttaactccattgctatctgacgaa
cttcgtgaagctaatattttgaggaacttagatttcttaaatgatgatggtgaagatgat
tttgatgctcttgtggcagaaatggagaaagaaatgagcatagcagacataatgaatgaa
ttgggttatggatgcactgctactatcttgcaatgcaaagaaatgttatccttatttttg
ccgctgactgaagtgactgttgctaggatacttggtatggttgtacgtacccgttcaggc
attgaggataaccttaatgtgttctcaactttccgtgctgctcttggtagcagcactgca
tctgatccatcaccattgagttcttggaatgccgatgtccttattgatgctataaagcaa
ctcgctcctggacttaactgggtaactgttatggaaaacctagatcacgagggtttctat
attcccgatggagcagccttttcctttttgatgtccatttacaaacattcctgtcaggat
ccttttcctcttggagctatttgtggttctatctggaagaatgctgagggccagctttcc
ttactcaagtatgctgtctcggtgcctcctgaagtatttaccttcgcgcattctgggagg
caactggagtatgttgatgcagtgaatgaccataaaattcaaattggacatgcaaatcat
gcgtggctgtgtcttgaccttcttgaagttctttgccagctggccgagagaggctatgca
agttctgtccgatccattctggagcaccctctgaagcactgtccagaagttttgcttctt
gggatggcccacatcaatactgcatataatctcctacagcatgaagtttccgctgctgct
tttcctgttatgctaaaaaatgctgctgctagcggtatgattcttcatttatggcatgtt
aatcctagcatcttgtgttggggtcttgtacaagcattgaacgttgatctggacaacatg
cacaaagttttggatgcctgtcaagagctaaagattctatcatcagtactggataggatt
ccttatgttttcgggatcagacttgctgcccttgcttcccacaaagaactcatggattta
gacaaatggttgagcaataacttaaacacatataaagatatcttctatgaggaatgcctt
aagttcttgagggaggtacatctcagtactcaagctcaagatgttgcttccagccgcttt
gatcctcccaatgctctttggactatttattcagaaacttcttctacctttttaaaggta
cttaagtctcattctgacctagtttcttcacgccacttagctgaggagctggacaagttg
caaataacatacatggatgctaattcacggcttaagagtgttggtggtgctgattcatcc
acttctgaggatattgaagcggaagccaacatatactttcatcaaatgttctctggtcag
ctgactaatgatgcaacggttcaaatgcttgctcgtttcaaagaatcaactgaaaagagg
gagcaagcaattttcgagtgcatgatcggtaatctgtttgaagaatacaaattcctctcc
aagtacccagaaaggcagctcaaaattgcggctgttctatttgggtcacttattaagaat
cagctggtaactcatcttgcacttggtattgccttgcgagctgtcttggatgcattgcgc
aagcctgctgattcaaagatgtttgtttttggaattatggcacttgaacagtttgttgat
cgtctgattgaatggccgcaatactgtaaccatatcttgcaaatatctcatctccgagca
actcattcagagcttgttgcgttcattgaacgggcactcgctaggatatcacatgctgaa
tcagaggtgggccacagtccccccgttgatcaattccatggtactattccatcttcctcg
atgaataccgaggtttcaacatttccagtggctggacagggtggcttgcggcaaaataca
caaggatcctcttcaaaccagcttcctcagagacaacagagttccttagaggagaggaaa
ccctctgctgctctctctagctacttgaagccagttttatcacctgcagtgcaacctgtc
gcagttccttcaagtgataatgctggcattcagaagccacagggtccaggcagtacttca
gcagtactcacatcttctcctggttttcttcgcccatctagatctgttacctcagcaagg
tttggttctgctttgaatattgaaacacttgttgctgctgcagagagaagagaaaaaccc
atagaggctcctgcatcagaaatacaggataagatttcatttattatcaataacttatct
gcggcaaatattgaagctaaagcaaaagagttcactggaattttggaagagcagtactac
ccgtggtttgctcagtatatggtgatgaaaagagcaagcattgagccaaattttcatgac
ttgtacctgaagttcctagacaaagcaaattcgaaagctttgtacaaggagattgtccaa
gcaacttacgagaattgcaaggttcttttaggttcagagttgataaagtcaagttcagaa
gaacgttcgttgctgaaaaaccttggaagctggctaggcaaaatcacaattggaaggaat
caagtcttgagggcgcgggagatcgatccgaagtctttgattatagaggcatatgaaaaa
ggtttgatgattgcagttattccatttacttcgaagattcttgaaccgtgccaaagcagt
ctagcataccaaccacctaacccatggaccatgggtattcttgggttacttgctgagatt
tatgcaatgccaaatctcaaaatgaatctcaagtttgacattgaggtcctgttcaaaaat
cttggtgtggatctaaaagaggtagttccaacttctcttcttaaagacagagtgagagaa
gttgaaggaaatcctgacttctcaaataaggatgctggatcttcccaaccacagatggtt
gctgatgtcaaatctggcattatatcttctctaaaccaggttgaactaccacttgaggtt
gccagtcctcatcctagtggcccttcacgaattttaactcagtatgctgctccacttcat
cttccatctgctgcaatgacggaagatgagaagctagcagcgcttgggctgtctgatcag
cttccttctgctcaaggccttttacaagggcaatcaccattttctgtgagtcagcttcct
gctgctgcatctaatatagagcagcaagttgttgtcaatcctaagcttcatgctctgggg
ctgcagttgcattttcagagtgtacttccaattgcaatggatagagctatcaaagagata
gtgtccagcatcgtgcagcgcagtgtttctatagcaactcagacgacaaaggaacttgtt
ttgaaggactatgccatggaatcggatgagacccgcatacgtaatgctgcacatttgatg
gttgccagtctgtcaggaagtctagctcatgtgacatgcaaggaacctttacgtggttca
atatcaggccagcttcgtactttacttcagggattgagtattgcaagcgagctccttgaa
caagctgttcagcttgttactaatgacaatctcgatcttggctgtgcgatgattgaacaa
gcagcaacagagaaggctatacagactattgatggagaaatagctcagcagcttaacata
aggaggaagcacagagagggtgtcggtcccacattctttgatgcaagcctttatacacaa
ggacatatgggtgggttaccggaagctcttcgccctaaacctggccgcttatcccattct
cagcaacgagtttatgaggattttgtccgcttgccttggcaaaatcaatcaagtcaaagc
gcaaacgctgtgcctgctgctccctcaacttcttctggcagtggtggtgtctccagggcg
tatatgtcaggaactgggcaaatgaaccccaacctttactcgtctggccttgtaaatgca
ggaataagtgctgttccgcagccattggaaatatcagaagagatagatacttcgtctcaa
cttaatagtgcttcctctccccatcttgggatgggtgatactgtcacttccaacagtttt
gaaactgaggctatcgttgaaccattcacatcggtctcagctcctgaattgcatccagtg
gaaccatcaagtgttgcaaaggagtcaggagcttctttacagccatcaaatgcaacagct
acctctgaacgtgctggaaatagtatctccgagccgctgctgactactggtgatgcgttg
gataagtaccagattatctctgaaaagcttgaaagcctggtgagtgaagaagctaaagag
gcagaaattcaggcacttcttcttgaagttccggcaatcatcctgaaatgcattagtaga
gatgaggctgccttggcagtggcccagaaggctttcaaggggttgtatgaaaatgcatca
aatagtgcacatgttggtgctcatcttgcaattctggcttctatccgtgatgtcagcaag
ctttttgttaaggagctaactagttgggttatttactctgatgaggagcggaagttcaac
aaagacattacagttggtttgatacgcagtgaactgctcaaccttgctgagtataatgtg
cacatggctaaattacttgatgctggcagaaacaagtgtgctactgaatttgccatttct
cttattcaaacactggtgataagtgattctagagtcatatccgagctacaaaaccttgtt
gatgtacttgctaagattgcagccaggccaggttctcctgagtctctacaacaactagtg
gagattgctaagaaccctgcagctaatgctgctgcactgtctagtgttacttttgggaag
gatgatagcaacaaacaatctagagacaaaaagattgccgtgactgctactggtaccaga
gatgattatggtgctcctgaatatgttgaacctgatcctgcaggcttccgcgagcaggtc
tcaatgctgtttgccgagtggtatcgtatttgtgaaattcctggagcgaatgatgcaact
catgctcattatatcttgcaattaaaccagagtggcctattaaaaggcgatgaaacttca
gatcgttttttccgcagactcacggaactttctgtttcgcattgcctttcatctgaggtc
attagttcaacccctcaatctcaccaagtacaacctctatcattccttgcaattgatatc
tatgcgaaattagtgttctcaatcttgaagttttatcccgtggatcaaggatctagtaaa
ttattgctgcttccaaaggttctcgctgtgactgtcaaattcatccagaaagacgctgag
gaaaagaagatgacctttaatcctagaccgtattttaggcttttcattaattggctagtg
gatctcagttccctggatcctgtttttgacggtgcaaattttcaggttttaacagcttta
gccaatgctttccatgctcttcagcccctcaaagttccaggattcagctttgcatggctt
gaacttgtaagtcatcgaagttttatgccaaaactacttgctggaaatgcccaaaaggga
tggccttattttcaacgattattggtggatctcttccagtttatggagccctttctgagg
aatgctgagctaggagaaccggtccagtttctgtataaagggactctcagggttttgttg
gttctccttcatgattttccggagtttctctgtgactaccatttcagcttctgtgatgtt
atccctccaagctgcatacagatgcgaaatataattttaagtgcatttcctcgcaacatg
aggcttcctgatccatcaactcccaacttaaagattgatctacttgcagagattagtcaa
tcccctcgcattctttctgaagttgatgcagctcttaaatcaaagcagatgaagggtgat
gtagatgaatacctgaagacaaggcaacaggggtctccatttttgagtgaattgaagcag
aagctgctgctattgccaagtgaagctgccaaggctgggacacgctacaatgtacccctt
atcaattcccttgtactctatgttgggatgcaggctatccagcagctgcaggcaaaaact
cctcatgcacagtcgatgcccagtagtgttccatttgctgtgttcttggttggtgctgct
ctagatgttttccagactttgataatggacttggacaccgagggccgttacttgtttttg
aatgcagtcgctaaccaattgcgatacccaaataatcacacacattacttctcctttatt
ctgctctacttatttgcagaatcgaaccaggaaatgatccaagagcagataaccagagtc
ctattagaacgcctgattgtaaatcgacctcatccatggggtcttctgatcacgttcatt
gagttgataaagaatccgaggtacaacttttggagtcgaccatttacaagatgtgcccca
gagatcgagaagctgtttgaatccgtctcaaggtcatgtggtggccctaaacccgtggat
gagaacgtggtgtcaggtggaatacctgatatccattag
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integrated database retrieval system
