Laccaria bicolor: LACBIDRAFT_245901
Help
Entry
LACBIDRAFT_245901 CDS
T01044
Name
(RefSeq) hypothetical protein
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
lbc
Laccaria bicolor
Pathway
lbc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lbc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LACBIDRAFT_245901
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lbc03021
]
LACBIDRAFT_245901
Enzymes [BR:
lbc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LACBIDRAFT_245901
Transcription machinery [BR:
lbc03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
LACBIDRAFT_245901
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Rav1p_C
Motif
Other DBs
NCBI-GeneID:
6072016
NCBI-ProteinID:
XP_001876601
JGI:
245901
UniProt:
B0CXW7
LinkDB
All DBs
AA seq
1711 aa
AA seq
DB search
MNIAHSLPSTVAGVSFSFLTSQDIRRISVKQIVNPVLLDDLNRPNIGGLYDPSLGPSDRS
DICATCHLTYFTCPGHFGHIELPAPVFHPLFMTNMYNLLRGTCMFCHRFKMTRTVLWKFM
AKLRLLERGLLDAAQGVDDITLRVGRKQEKEKKRKSKKGDDGEEDQDDDEEDANDPEVPD
ETPQGFMTRINLYVAIHLHRASSSKRDNYKDGLVYQTRKDVINDFLKSCILKKCQNGDCG
SHAYTYRKEGHTKVIEYDLSVKQKAQLARRRPDVLLAEKAGNVVRQRNEDIDMDASEGPT
KPKEPQLPRAANGKIKTSRGRNERVVAPEECRAHLRRLFHNEAMMCSLLFGRHGPFAPIS
KDQLSFASADMFFLEVIPVAPTRFRPPAKLGEVLFEHPQNELLSKVLNTSYRMRDLSLDL
RAASQKTGNVDEGARKTLMSALLDRLVQLQVDVNSFMDSSKNPAPVRQSKLPPAGVKQGL
EKKEGLFRKHMMGKRVNYAARSVISPDVNIEPNEIGIPPVFARKLTFPEPVTPANFHELR
QRVITGPHGYPGATLVEYEDGHQQSLDKLTVEQRTAIANQLLTPQEGDRGSGRRGLYTRT
TAMNKKVYRHLRDGDILILNRQPTLHKPSMMAHKARVLTGEKTIRMHYANCNSYNGEFMA
ILQMNIHFPQNHVARAEAMMIANTDNQYLVPTSGNPLRGLIQDHVVAGVWMTCQDAFFTR
EEYCQLLYGALRPEEESRGARLVTLPPTIWKPKPMWTGKQIISTVLKNITPKPFEGLSLN
AKTKVPGYLWGADSKEDQVVFMDGELLCGVLDKAAFGATDYGLVHSVYELYGADVAGRLL
GVLSRLFTKFLQHRAFTCRMDDLILTPEGDGKRNDLIKRGENLGTEGAIENFPSLSSTPK
LEIAAELTTLLEDVLRDDNKMAGLDVTVKTKLSKLTSSISDICLPNGLLRKFPFNHMQTM
TLSGAKGSAVNARQISCALGQQELEGRRVPVMVSGKTLPSFKAFETKAIAGGYVVSRFLT
GIKPQEFYFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGIRVHYDHTVRGSDNSIYQF
AYGGDGLDVTRQKHLYQFGFIVQNQISLARHIRPADIQNVVDESTAISYMKKVLKRSPDR
PDKNKPAKRDKYDPALSLYSPSRYLGSTSEQFAIAVDNYVKTNPHNLLAEKEDEVRFKSR
TPPLHPRNFRLLMNVKYMKSLVDPGEAVGLLASQGVGEPSTQMTLNTFHFAGHGAANVTL
GIPRLREIVMTASQKPKTPSMTMKVRPDITAEDITLFCKRASRVTLAQIVENVEVKEQLR
VEGETRRTQFTIEIKFFPKVEYQAEYDVEPSEILAVFATKFPLTLKREMQNEMKKLDADL
KSQIAELGKGKKAKSREGDDGNDGDDDEAPTKRKDDDEESEAGDGGADDEKRARQKKQQA
TYESDDSDVEDAEAFNDEDIEAAYAPETEAMELDAKPAKKDRAQSLKALISRMSDLFQGH
LPHATSFEFDESRCVFQLEFRLDMPKLLFVGIVERTCRATIVREIPGITECFQAKDEKKG
DITLTTNGSNFRGMWEFAVSSDESILEDDEIYSNDIYAILKTYGVEMARAAILREMGGIF
GAYNIQVDRRHLELIADYMTFDGGYKPFNRKGISTNPSPLLKASYETTGAFLSDATLYGD
FDDLSTPSGNIVLGRPNCTGTGVFDVVMGIA
NT seq
5136 nt
NT seq
+upstream
nt +downstream
nt
atgaatatcgcacattcgttgccttcgaccgttgcaggagtttccttttcatttctcacc
tcccaggatatcaggagaatatccgttaaacaaattgtcaatcccgttctactggatgat
ctgaatcgaccaaacattggaggtctctatgatccatccctcggtccaagcgaccgctca
gacatatgcgcaacatgtcacctcacgtattttacctgtccaggtcatttcgggcacatc
gagcttccagccccagtttttcacccactcttcatgaccaatatgtataatttgttgcgc
gggacctgcatgttctgccacagatttaaaatgactagaactgtgctttggaaattcatg
gcgaaactcaggcttctggaacgcggactgctggatgccgcacaaggtgttgatgatatc
acattacgcgtcggacggaagcaggagaaggaaaagaagcggaaatcgaaaaaaggagat
gacggggaggaagaccaagacgacgacgaagaagacgcgaatgaccccgaggttccggac
gaaactccccaaggattcatgacgaggattaacttatatgttgctattcaccttcaccgt
gcctcgagcagtaaacgcgacaactataaggatggattggtctatcaaacacggaaggac
gtcatcaacgatttcttgaagtcttgtatcttgaaaaagtgtcaaaatggcgactgtggc
tctcatgcgtatacgtatcgaaaggaaggccataccaaggtcatagaatacgatttgtct
gtaaagcagaaggctcagttggcgcggagacgaccggatgttttgcttgctgagaaagca
ggaaacgtggtccgacaacggaatgaagacatagatatggatgcgtcagaaggacccact
aagccgaaggagcctcagctcccaagagcagcaaatgggaaaataaaaacctctcggggt
cgcaatgagagggtggttgcgccagaggaatgccgtgcacatctacgtcgactcttccac
aatgaggccatgatgtgctccctcctctttgggcgtcatggtccatttgcaccaatatcg
aaggaccagctatcgttcgcctctgctgatatgttctttctggaagtcattcccgtcgcc
ccaactcgttttcggcctccagcgaaattgggcgaggtcctttttgaacatcctcagaac
gagcttctctctaaagttctcaatacatcataccgaatgcgggacctgagtttagatcta
cgggctgcttcacagaagaccggaaacgttgatgaaggggcgcggaagactctgatgagt
gcgctactcgatagattggtccagctacaggttgacgtcaacagttttatggatagcagt
aagaaccctgctcctgtaaggcaaagcaagcttcccccagctggtgtaaaacaagggctt
gaaaaaaaggagggtcttttccgaaagcatatgatgggaaaacgagtcaactatgctgct
agatcagtcatttcgcctgatgtaaatatcgagccaaacgaaattggaattccaccagtt
tttgcaagaaaattgacattcccagaacccgttacacctgccaacttccacgaactacga
caacgggtaataactggtccgcatggttatcctggagctactttggtagaatatgaagac
ggccatcagcaatcacttgataaactcaccgttgaacaacggacagccattgcaaatcaa
cttctaactccacaagagggtgaccgtggaagtggacgccgaggtctatacacccgaacc
actgccatgaacaagaaagtttatagacatcttcgagatggggacatccttattctgaat
agacaaccgactttgcataagcctagtatgatggcgcacaaagctcgtgtactgacagga
gagaagaccatcaggatgcactatgcaaattgcaattcttacaatggcgagtttatggca
atcttacagatgaatattcattttcctcagaaccatgtggcgcgggctgaggcaatgatg
attgcgaatacggacaatcaatatctagtgccaacatctggaaatccacttcgtggtctc
attcaagatcacgtagtcgctggcgtgtggatgacatgccaagacgctttctttacccgc
gaggagtactgtcagctactttatggtgctcttcgtcctgaagaagaaagtcggggcgct
cgtttggttacattaccccctaccatctggaagccaaagccaatgtggacaggaaagcaa
atcatctccaccgtcctcaagaatatcacccccaagccattcgagggcctttctcttaac
gcaaagacgaaagtacctggttatctttggggtgccgattcaaaagaggatcaggtcgtt
ttcatggatggagaacttttatgtggggtgctggacaaagcggcattcggtgctacggat
tatggccttgtccactctgtgtatgagctctacggcgccgacgttgctggaaggttgttg
ggagtcttgagccgtctgtttactaaattcctacagcaccgcgcgttcacttgccggatg
gatgatcttatcctcactccggaaggtgatgggaagcggaacgacttgatcaaacgcggg
gaaaaccttggaacggaaggggctatcgaaaatttcccttcactcagcagcacgcccaag
ctcgaaattgctgcagagttaacaacgctgcttgaggatgtcttgagggacgacaacaag
atggccgggctggatgttaccgtcaagacgaaactgtccaagctcacgtcgtcgatatcg
gacatatgtttgcccaacggcctccttcggaaattcccctttaaccacatgcagacaatg
acactgtcgggtgcgaaaggctcagccgtcaatgcacgacaaatttcttgcgctctgggt
cagcaggaattggagggtcggcgtgtacctgtcatggtcagtgggaagacgcttccttcg
ttcaaagcttttgagaccaaggccattgctggtggatacgtcgttagtcgtttcctaacc
ggtataaagcctcaggagttctacttccattgcatggctggccgagaagggttgatcgat
acagccgtcaagacttctcgctcaggctaccttcagcgatgtctcatcaagcatcttgaa
ggaattcgtgtgcattatgaccacacagtcagaggcagtgacaactccatttatcaattt
gcctatggaggggatggtcttgacgtgaccaggcaaaagcacctgtaccaatttggtttc
atcgtacaaaaccaaatctccctcgcccgccacattagaccagctgacatccaaaacgtt
gttgacgaatccaccgccatctcgtacatgaagaaagtgctcaaacggtcgccagatcgc
ccggataaaaacaaaccagcgaaacgtgacaagtacgatccggcgttgtcactgtacagc
cctagccgataccttggaagcacttcagaacaatttgccatagcagtcgataattatgtg
aaaacgaatcctcacaatcttctagcagaaaaggaggatgaagttcgttttaagagtcga
acaccgccacttcatcccagaaacttccgactcctcatgaacgtcaaatatatgaagagt
ttggtcgatcccggagaagcagtgggtctattggcatcccaaggtgttggcgaaccatcc
acccagatgacgctgaatacttttcactttgctggtcacggtgccgccaacgttacgctt
ggtatccctcgtctccgtgaaatcgtcatgacagcctctcaaaaaccaaagacaccctcg
atgacaatgaaagtccgccccgacataacggcagaagatattaccttgttctgcaagaga
gctagtagagtcaccctagctcagatcgtggagaatgttgaagtcaaagaacaactccga
gtggaaggagaaactcgaaggacacagttcacgattgaaatcaagtttttccccaaggta
gaatatcaagccgagtacgacgtggaaccttcagaaattcttgctgtattcgccaccaaa
ttccctctaaccctcaagagggaaatgcagaatgagatgaagaagctggatgcagacttg
aaaagtcaaatagccgagctaggcaaagggaagaaagccaagtcccgagagggcgacgac
gggaatgacggtgatgatgatgaggccccgacaaagaggaaggacgatgatgaggaaagc
gaagccggtgacggtggggcggatgatgagaagcgtgcgcgacaaaagaagcaacaggcg
acgtatgagagcgatgactcggacgttgaggatgctgaggcgttcaatgatgaagatatc
gaagctgcatacgctcctgaaactgaagcaatggaattggatgcgaaacccgcaaagaaa
gatcgtgcacaatcgctcaaagcgttgatcagtcgcatgtcggacctcttccaaggccac
ctgcctcacgcgacgtcttttgaattcgatgagtcgagatgcgtctttcagctagagttc
cggcttgacatgccaaaattgttgtttgttggcattgttgagcgaacgtgtcgggcgacg
atcgtccgcgaaattccagggatcacagaatgtttccaggcgaaggatgagaagaaaggg
gacatcacgctcaccaccaacgggtccaacttccgtgggatgtgggagtttgctgtgagc
tctgatgagagcattctggaagacgacgaaatctattccaacgacatctacgcgatcctc
aagacatatggggtggaaatggcccgtgcagctatcttgcgtgaaatgggaggaatcttt
ggagcgtacaacatccaagtggacagacggcatcttgagctcattgctgactacatgact
tttgatggtggttacaagccgtttaaccgcaagggaatctcgacgaatccatctccgctt
ctgaaagcctcttacgaaacgacgggtgcattcttgtcagatgcaactctgtacggggac
tttgatgatttgagcacaccgtctggcaacattgttttgggtcgacctaattgtacgggt
acaggggtgtttgatgtggtcatgggaatagcgtga
DBGET
integrated database retrieval system