Laccaria bicolor: LACBIDRAFT_293575
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Entry
LACBIDRAFT_293575 CDS
T01044
Name
(RefSeq) hypothetical protein
KO
K14328
regulator of nonsense transcripts 3
Organism
lbc
Laccaria bicolor
Pathway
lbc03013
Nucleocytoplasmic transport
lbc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lbc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
LACBIDRAFT_293575
03015 mRNA surveillance pathway
LACBIDRAFT_293575
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbc03019
]
LACBIDRAFT_293575
Messenger RNA biogenesis [BR:
lbc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
LACBIDRAFT_293575
mRNA cycle factors
P-body specific factors
LACBIDRAFT_293575
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
DUF3915
Motif
Other DBs
NCBI-GeneID:
6074644
NCBI-ProteinID:
XP_001878990
JGI:
293575
UniProt:
B0D4A2
LinkDB
All DBs
AA seq
520 aa
AA seq
DB search
MSTSPSRPKGPPTKPKKERERERERERKEKALQQSIERLKTVVRRLPPNLPEDVFWQSVQ
PWVTEESVSWKVFYAGKSRKRLSKENIPSRAYIAFKSEEKLAQFSREYDGHLFRDKAGNE
SYAIVEFAPYQKVPTEKRKPDARNATIEKDEDYISFIDSLNASANAEPPTLEALIASTQQ
APQPKTTPLLEALKAEKSANKDKEAILRNHAHYKDQLPGALLARKDDKKKVPPAVQAQKV
AAEAAAGNKKAAGKKPQVAPSPAAALNQNQNKPGQVGLPKSVAGPSNLGAKPPPKPARAP
RAPPPPSQPKPQNVPITAIQQQPGPSTPQQQPASSDGTTTPTPRRTRPVIGLGSRQFEAA
LSGVAGGKSRREREREREREREKEREEGAVTPTAAFVPAPGLALMASNIKEAPGKPAGPP
TSPRRGRRGSHGGGGGGSGGGGIGRPPSAASDTKAPGIIQRADAPLIVQRDVPVVVGPPV
VNPVQIPMGVGPGRGGGGSLKEGTVIGGITAVVGGYPPSI
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacatccccaagtcgacccaaaggcccacccacgaaacccaaaaaagaaagagaa
cgtgagagggaacgtgagcgcaaggagaaagcactccaacaatcaattgaacgtctaaag
acagtcgttcgccggctaccacccaatctgcccgaggacgtcttctggcagagcgtacag
ccctgggtgacagaagaatctgtctcttggaaagtgttttatgctggtaaatctaggaag
cggttatcgaaggagaatatcccttcacgagcttacatcgcgttcaagagcgaggaaaag
ctcgcccaatttagcagggaatacgatggtcatttgtttcgagataaagcaggcaatgag
tcgtatgcgatcgtagagttcgctccgtaccagaaagttcctacggagaaacgaaagcca
gatgctcggaatgcaactattgagaaagacgaagactatatatctttcatcgactctcta
aacgcatcagcaaacgcagaaccacccaccctcgaagcactcatcgcttcaacccaacaa
gcaccccaacccaaaaccacacccctcctcgaagccctcaaagccgaaaaatcagcaaat
aaagataaagaagccatcctccgcaaccacgcacactacaaagaccaactcccgggagct
cttcttgctcggaaagacgataagaagaaagtaccccccgctgttcaagcgcagaaagta
gctgctgaagcagcagcgggaaataagaaggcggctgggaagaaaccgcaggttgcacca
tcccccgcagcagcattgaaccagaaccagaacaagccgggacaggtgggattaccaaaa
tccgtcgcaggcccttctaatctcggtgcaaaaccaccacccaaacctgcacgagcacca
cgagcaccccctcctccttcacaacctaaaccgcagaacgtacctatcactgcgattcaa
caacagccaggaccctcaaccccccaacaacaaccagcgtcatcagatggcacaacgacc
cccaccccgcggcggacgcgccccgttataggtctaggatcgaggcagttcgaggctgcg
cttagtggtgtggctggtgggaagtctagacgcgaacgggaacgggagagggagagggaa
agagaaaaggagagggaagagggcgccgttacgcctactgcggccttcgttcccgctcct
gggttggcactgatggctagtaacatcaaggaggcgccagggaaacccgccggaccaccc
acttcgcctcgcagagggaggagggggagtcatggagggggaggtggtgggagtggtggt
ggtggaattggcaggcctccttctgctgcttctgacacgaaagctccggggattatacaa
cgcgcggatgcgccgttgatcgtgcagagggatgtgcctgttgttgttgggccacctgtt
gttaacccagttcagattcccatgggcgtgggtcctgggagagggggtggaggttctctc
aaagagggaacggttatcggtggaataacggccgtggtagggggatatcctccttctatt
tga
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