Lachnospiraceae bacterium JLR.KK008: V1224_02465
Help
Entry
V1224_02465 CDS
T10585
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
lbp Lachnospiraceae bacterium JLR.KK008
Pathway
lbp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lbp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
V1224_02465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lbp03021
]
V1224_02465
03400 DNA repair and recombination proteins [BR:
lbp03400
]
V1224_02465
Enzymes [BR:
lbp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
V1224_02465
Transcription machinery [BR:
lbp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
V1224_02465
DNA repair and recombination proteins [BR:
lbp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
V1224_02465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
WWR16340
LinkDB
All DBs
Position
492103..495969
Genome browser
AA seq
1288 aa
AA seq
DB search
MEKNRIRPTAAGKNVRMSYSRQKEVLEMPNLIEVQKDSYHWFLSEGLKEVFEDISPIADY
SGHLSLEFVGFELCRDEMPVNKNTIEKCKERDATYAAPLKVKVRLYNKEKEEISEHEIFM
GDLPLMTETGTFVINGAERVIVSQLVRSPGIYYAIDHDKIGKRLFSSTVIPNRGAWLEYE
TDSNDIFYVRVDRTRKVPITVLIRALGVGTNDEIRELFGEEPKIEASFAKDVAENYQEGL
LELYKKIRPGEPLSVESAESLINAMFFDPRRYDLAKVGRYKFNKKLALRNRIRHQVLSED
VVDTLTGEVLAQAGTKVTAELADQIQNAAVPFVYIQTEEKNVKVLSNMMVDITNFVDCDP
KELGVTELVYYPVLAQILEEYSDQPGELAAAIKRNIHELIPKHITKEDILASINYNIHLE
YGIGNDDDIDHLGNRRIRAVGELLQNQYRIGLSRLERVVRERMTTHDAEEISPQVLINIK
PVQAAVKEFFGSSQLSQFMDQNNPLGELTHKRRLSALGPGGLSRDRAGFEVRDVHYSHYG
RMCPIETPEGPNIGLINSLASYARINEYGFVEAPYRKIDKTDPKNPRVTDEVVYMTADEE
DNYHVAQANEALDANGYFVRNSVSGRYREETQEYPKAMFDYMDVSPKMVFSVATALIPFL
ENDDANRALMGSNMQRQAVPLLMTEAPAVGTGMEPKAAVDSGVCILAKRSGTVTYVSANM
IRMTYDDGEKEEIRLTKFSRSNQSNCYNQKPIVFKGDHVEAGQVIADGPSTSEGELALGK
NPLIGFMTWEGYNYEDAVLLSEKLVRDDVYTSVHIEEYEAEARDTKLGAEEITCDVPGVG
DDALKDLDERGIIRIGAEVRAGDILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSL
KVPHGEYGIVVDAKVFTRENGDELPPGVNQAVRIYIAQKRKISVGDKMAGRHGNKGVVSR
VLPVEDMPYLPNGRPLDIVLNPLGVPSRMNIGQVLEIHLSLAAKALGFNVATPVFDGANE
IDIMDTLDLANDYVNLEWEEFERKHKEELLPEVLEYLSEHRENRNLWKGVPISRDGKVRL
RDGRTGEYFDSPVTIGHMHYLKLHHLVDDKIHARSTGPYALVTQQPLGGKAQFGGQRFGE
MEVWALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIIKGDNIPAPGIPESFKVLLKELQS
LGLDVKVLREDQTEVEIMESIDYGETDYRYEIEGDSGSYNREEDSLGSMGYQKQEFDEDG
ELVSAEEEEDDEAFEDDFSAEYVDSLDE
NT seq
3867 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaaaacagaatacgtcctactgccgcaggcaaaaacgtacgtatgagttattca
cgacaaaaagaagtgttagagatgccaaacctgatagaagtccaaaaggattcctatcac
tggtttttaagcgaaggcttgaaagaagtattcgaagatatttctccgattgcagattat
agcggccatttgagtcttgaatttgtaggcttcgagctgtgcagagacgagatgccggtc
aacaaaaatacgattgagaaatgtaaggagcgggatgctacctatgcggcccctctgaaa
gtaaaagtccgtctgtataataaggaaaaggaagaaatcagtgagcatgagatattcatg
ggtgatcttccgcttatgacagagacaggtactttcgtcatcaatggcgcggaacgtgtt
atcgtcagccagcttgtccgttctcctggtatctactatgccattgatcatgataagatc
ggtaaacggctgttttcctctacagttatccccaaccgcggtgcatggctggagtatgag
acagattccaatgacattttctatgttcgtgtggacaggacaagaaaggtgccgatcacg
gtgctgatccgtgcactcggcgtgggtacgaacgacgagatccgggaactcttcggtgag
gaaccgaagatcgaggccagctttgcgaaggacgttgctgagaactatcaggaaggtctg
ctggaattatataaaaagattcgtcccggggaaccgctttccgtggagagtgcggagagt
ctgatcaatgccatgttctttgacccgagaagatatgatcttgcgaaagtcggaaggtat
aaatttaacaaaaagttggcgctgcgcaatcgcatccggcatcaggtattgtcggaggat
gtggttgatacgctgacaggagaagtgctggcgcaggcgggtacaaaagtgacggcggaa
ctggccgatcagattcagaatgcggcggtgccttttgtatatattcagacagaggaaaag
aacgtcaaagttctttccaatatgatggtagatattacgaacttcgtggactgtgatccg
aaagaactgggcgtgacagagcttgtctattatcctgttctggcgcagattctcgaagag
tacagcgaccagccgggcgagctggcagccgcgattaaaagaaatatccatgaactgatt
ccgaagcatattacgaaggaagatatactcgcttccatcaattataatattcatctggaa
tatggaattggaaacgacgacgatattgatcatcttggcaacagacgaatccgtgcggta
ggggaacttctgcaaaaccagtaccggatcggattatccagactggagagagttgtcaga
gagagaatgacgacccatgacgctgaggagatctcgccgcaggtgttgatcaacattaag
ccggtacaggcggctgtgaaagaatttttcggttcttcccagttatcgcagtttatggat
cagaacaatccgcttggtgagctgacccacaagagacgtctctccgcactgggcccgggt
ggtctgtccagagacagagccggatttgaggtccgtgacgtgcactattctcactatgga
agaatgtgcccgatcgagacgccggaaggtccgaacatcggtctgatcaattcgcttgca
agttatgcacggatcaacgagtatggttttgtggaagcaccgtatcgtaaaatagataag
acggacccgaaaaatccgcgggttacagatgaagttgtctatatgacagcggatgaggaa
gacaattatcatgtggcgcaggcgaacgaagcgcttgatgccaatggatatttcgtgaga
aacagcgtgtccggccgttaccgcgaagagacgcaggagtatccgaaagcaatgtttgac
tatatggatgtgtcgccgaagatggtgttctccgtggcaacggcgctcattcctttcctg
gaaaatgacgatgccaaccgtgcgctgatgggttctaacatgcagcgtcaggcggtgccc
cttctgatgacggaggcgccggcagtgggaactggtatggagccgaaggcggctgtggac
tccggtgtctgcatactggcgaaaaggtcgggtacggtcacttatgtatcggcgaatatg
atccggatgacttatgatgacggagaaaaagaagagatccgtctgacaaagttttcacgc
agcaatcagtctaactgctataatcagaagccgatcgtatttaagggagatcatgtggag
gccggtcaggtgattgccgatggtccttccacttccgagggagagcttgcgctcggtaag
aatccgctcatcggctttatgacatgggaaggctataactatgaggatgccgtactgctc
agtgaaaagctcgtgcgcgatgatgtttatacatcggtgcacattgaagagtatgaggcg
gaggctcgggatacgaagctgggagcagaggaaattacctgtgacgtaccgggggtaggc
gatgatgctctgaaagatctggatgagagaggaattatccgtatcggtgcggaagtgcgg
gccggagatattctcgtcggcaaggtaacgcccaagggcgagacagagctgacggcggag
gagagacttcttcgtgcaatcttcggagaaaaagcgcgtgaagtaagagacacttccctg
aaggtgccccatggagaatatggtattgttgtggatgccaaagtatttacgagggagaac
ggcgatgagcttcctccgggagtgaatcaggcagtccgtatttatatcgcacagaagaga
aagatctccgtcggtgacaagatggcgggccgtcatggaaacaagggcgttgtctcccgt
gtgcttccggtggaggatatgccatatctgccgaatgggcgtccgcttgacatcgtgctc
aatccattgggcgtgccgtcccgtatgaacattggacaggtactggaaatccatctttct
ctggcggcaaaggcccttggctttaatgtggccacaccggtgtttgatggcgccaacgag
atcgacattatggatacgctcgatctggcgaacgattatgtcaacctggaatgggaagaa
tttgaaaggaaacataaggaagaactccttcctgaagttttggaatatttatcggaacac
agagaaaaccgtaatctctggaaaggtgtgccgatctccagagacggaaaagtacgtctg
cgtgatggacgtaccggagaatattttgacagtccggtaacgatcggacatatgcactat
ctgaaactccatcatcttgtggatgataagatccatgcgcgttccaccggtccgtatgcg
cttgtcacacagcagcctttgggcggcaaggcgcagttcggcggacagcggtttggagag
atggaagtatgggcactggaggcatatggtgccgcttatacactgcaggagattctcacg
gtgaagtcggatgacgtcgtaggacgtgtgaaaacttatgaggcgatcatcaaaggcgac
aatattccagcgccgggcattccggagtcattcaaggtattgctcaaggaactgcagtcg
cttggccttgacgtaaaagtactccgcgaagatcagaccgaggtggagattatggagagc
atcgactacggagaaacggattatcgttatgagatcgaaggtgactccggctcctataac
cgcgaagaagattctctaggctccatgggctatcagaagcaggagtttgacgaagacgga
gagctagtgagtgcggaggaagaagaggatgacgaagcatttgaggatgacttcagtgct
gagtatgtggattctctcgatgagtaa
DBGET
integrated database retrieval system
