Lachnospiraceae bacterium oral taxon 500: C3V36_12390
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Entry
C3V36_12390 CDS
T05749
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
lbw
Lachnospiraceae bacterium oral taxon 500
Pathway
lbw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lbw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
C3V36_12390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lbw03021
]
C3V36_12390
03400 DNA repair and recombination proteins [BR:
lbw03400
]
C3V36_12390
Enzymes [BR:
lbw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
C3V36_12390
Transcription machinery [BR:
lbw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
C3V36_12390
DNA repair and recombination proteins [BR:
lbw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
C3V36_12390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RnfC_N
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AVM69969
LinkDB
All DBs
Position
complement(2721898..2725722)
Genome browser
AA seq
1274 aa
AA seq
DB search
MEKRRIKPMHIGDGLRMTYSRQKEVLDMPNLIEVQKNSYKWFLNEGLKEAFQDISPVEDY
TNSLSLEFLDFSFSDDPKYTVEECKERDATYAAPLKVRARLYNKEKDEINEHDIYMGELP
LMTETGTFVINGAERVVVSQLVRSPGIYYAIKHDKIGKELYSCTVIPNRGAWLEYETDSN
DVFYVRVDRTRKVPITVLIRALGIGKDSEIIDLFGEEPKILASLEKDNSRSYEEGLIEVY
KRIRPGEPPTVESAESLLNAVFFDARRYDLARVGRYKFNKKLAFENRIVGSVLAEDVVDT
QTGEIVAEAGTEITTELAKELQDLAIHAVYVTVENRKVKVLSNLFVNINKYVDIDAKAAG
IYERVYYPALMDLMEEYSGEELITQIKKNVAHLIPKHITKEDIFASINYNMHLEYHIGTK
DDIDHLGNRRIRAVGELLQNQFRIGLSRMERVIRERMTVQDTETVSAQSLINIRPVSAAI
KEFFGSSQLSQFMDQTNPLGELTHKRRLSALGPGGLSRDRAGFEVRDVHYSHYGRMCPIE
TPEGPNIGLINSLATYARINEYGFIESPYRLIDKSSGKPIVTEQVEYFTADEEDKYRIAQ
ANEPLTEKGEFINKYVTGRFAEQIIEMDATKVDLMDVSPKQVFSVATSMIPFLENDDANR
ALMGSNMQRQAVPLLSTESPIVGTGIEHKAAVDSGIVVLAKEDGVIDKVSATEIIVKTAG
GKKVSHRLQKFVRSNQGTCMNQRPIVKKGQEVVKGEVIADGSSTQGGEIALGKNPLIGFM
SWEGYNYEDAILLNENLVRDDVYTSIHIEEHESEARDTKLGPEEITRDIPGVGEEALKDL
DERGIIRIGAEVRSGDILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLKVPHGQE
GTIVDVHIFTRENGDDLSPGVNQAVRVYIAQKRKISVGDKMAGRHGNKGVVSRVLPQEDM
PFLPNGRPLDIVLNPMGVPSRMNIGQILEVHLGLAAKALGFKIATPVFDGANEEDIMDTL
DMANDYVNMEFKDFEKKWKSTLDKEVFEYLSANRAHREEWKGVKIPRSGKLPLRDGRTGE
YFDAEVTVGYMHYLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALE
AYGAAYTLQEILTMKSDDVVGRVKTYEAIIKGENIPEPGIPESFKVLLKELQSLALDVNV
LTGDTVVELKEDDYDDGVDFELGDYRLDPLDDDNDSFDYSEIDEIDANEALDDDYDDINL
EDSFIIGEEDDFDN
NT seq
3825 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaaagaagaattaagccgatgcatattggcgacggattgcggatgacatattca
aggcagaaagaagtcctggatatgcccaatctgatcgaagtgcagaaaaattcctacaaa
tggttcttgaatgaaggactaaaagaagcgtttcaagacatttctccggttgaagactat
accaacagcttatcattagaatttttggattttagcttcagcgatgaccccaagtatacg
gtcgaggaatgtaaggaaagggacgcgacctacgccgctccgttaaaggtcagggccaga
ttatacaacaaggaaaaggatgagatcaacgagcatgatatctacatgggtgagttgccg
ctgatgacggaaaccggtacttttgtgatcaacggcgcagaaagagtcgttgtatcgcag
ttggtgcggtcgcccggtatttattatgcgattaaacatgataaaatcggaaaagaactt
tactcctgtacggttattcccaatcgtggtgcttggctggaatatgaaaccgattccaat
gatgttttttatgtgcgggtcgaccggaccagaaaagtgccgattaccgttttgattcgg
gcactgggcattggcaaggattcggaaattattgatttgttcggtgaagagccgaaaatt
ttggcaagtttggaaaaagataattcccgctcgtatgaagaggggttgattgaagtttat
aaaagaattcggccgggagagccgccaacggtagaaagcgcggaatccctgcttaatgct
gtcttttttgatgccagacgctatgatttggcgcgggtcggacgttataagttcaacaaa
aaattggcgtttgagaaccggattgtcggttctgtgctggcggaggatgtggttgatacc
caaaccggcgagatcgtggctgaagcgggcactgaaatcacgacggagctggctaaggaa
ctccaggatctggcgattcacgcagtttatgtaacggttgaaaaccgcaaagtcaaggtg
ttaagcaatttgtttgtcaatatcaataaatatgttgatattgatgccaaagctgccgga
atttatgaaagagtatattacccggccttaatggatttaatggaagaatattcgggtgaa
gaattaattacccagattaaaaagaatgttgcccatttgattcccaagcatattaccaag
gaagatatttttgcttccatcaactataatatgcatttggaatatcatatcggcaccaaa
gatgatatcgatcacctgggcaaccgccggattcgggcggtgggcgagctgttacagaat
cagtttcggattggtctttcccggatggaaagagtgattcgggagcgaatgacagtgcag
gatacggaaacggtttccgcccagtcactgattaacattcggccggtttcggcggcaatt
aaagagtttttcggcagttcgcagctgtcgcagtttatggatcaaaccaatcctctgggt
gagctaacccataaaagacgtttgtcggcactcggtcccggcggtttatccagagacaga
gccggctttgaggtgcgggacgttcactattcgcactatggaagaatgtgtccgattgaa
acgccggaaggtccgaacatcggtttgatcaactcacttgcgacttatgcccggattaac
gaatacggctttattgagtcaccctatcggttgatcgacaaaagcagcgggaaaccgatt
gttaccgagcaggttgaatattttacggccgatgaagaagataagtaccggattgcgcag
gcaaacgagccgctgacggaaaagggcgagtttattaataaatatgtaactggtcggttc
gccgagcagattattgaaatggatgcgaccaaggttgatttgatggacgtttcgcccaag
caggttttttcggtggcgacgtcgatgattccgttcctggaaaatgacgatgccaaccgg
gcgctgatgggttccaacatgcagcggcaggcagttccgctgctgtcaaccgaatcgccg
atcgtcggtacgggaattgagcataaagcggcagttgactccggcatcgtggtgctggct
aaggaagatggcgtgattgataaggtttccgctacggagatcattgtcaagactgccggc
ggcaagaaggtttcgcatcgtttgcagaagtttgttcgctccaaccaaggtacctgcatg
aatcaaaggccgattgtgaaaaagggacaggaagttgtaaagggcgaggtcattgccgac
ggctcttcgacacagggcggtgagattgcgcttggtaagaacccgctgattggctttatg
tcatgggagggctataactacgaggacgcgatcctgctcaatgaaaacttagtccgggac
gatgtttatacgtccattcatattgaggaacatgaatcggaagccagagataccaaactg
gggccggaagaaattaccagagatattccgggcgtaggcgaggaagcgctgaaggatctg
gatgaaagaggcattatccggatcggtgcagaagtgcgttccggtgatattttagtcggc
aaggtaacgcccaagggcgaaacggagctgacggcggaggagcggctgctcagggcaatt
ttcggagaaaaagccagagaagtccgggatacttcgcttaaagttccgcatggtcaagag
ggcaccattgttgacgtgcatatttttaccagagaaaacggcgatgatttgtcacccggc
gttaatcaggcggtgcgggtgtatattgcccagaaaagaaagatttcggtcggagataaa
atggccggccgccacggcaataagggcgttgtgtccagagttctgccgcaggaagatatg
ccgtttttaccgaacggacggccgctggatatcgtcttaaacccgatgggcgtgccttcc
cgtatgaatatcggtcagattttggaagtgcatttgggcttagcggccaaggctttgggc
tttaagattgccacaccggtatttgacggagctaatgaagaagatatcatggatacgctg
gatatggccaacgactatgtcaatatggagtttaaggactttgagaagaagtggaagagc
actttggacaaggaagtgtttgaatatctatccgccaatcgggcacaccgcgaagaatgg
aagggtgtaaagattccgcgttcgggtaagcttccgcttagagacggccgtaccggcgag
tactttgacgccgaggtcaccgttggctacatgcattatttgaagcttcaccatttggtt
gacgataagatccatgcccggtcaaccggtccgtattcgctggtaacgcagcagccactg
ggcggtaaagctcaattcggcggacagcggttcggtgagatggaagtatgggcactggag
gcttacggtgcagcctacaccttgcaggaaattttgaccatgaagtccgatgatgtggtc
ggccgggttaaaacctatgaggcgattatcaagggtgaaaatattcccgaaccgggcatt
ccggaatcgtttaaggttctgctcaaggaattgcagtcgctggcgctggatgtgaatgtc
ttaaccggtgatacggtagtcgagctgaaagaagacgactatgacgacggtgttgatttt
gaattgggtgattatcggctggatccgctggatgatgacaatgacagctttgactacagc
gagattgacgagattgatgccaatgaagctttagatgatgattatgatgatattaatttg
gaagacagctttattatcggcgaggaagacgattttgataattaa
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integrated database retrieval system
