Leadbetterella byssophila: Lbys_2621
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Entry
Lbys_2621 CDS
T01350
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lby
Leadbetterella byssophila
Pathway
lby03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lby00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Lbys_2621
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lby03021
]
Lbys_2621
03400 DNA repair and recombination proteins [BR:
lby03400
]
Lbys_2621
Enzymes [BR:
lby01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Lbys_2621
Transcription machinery [BR:
lby03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Lbys_2621
DNA repair and recombination proteins [BR:
lby03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Lbys_2621
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Peptidase_M23
RPOC_hybrid
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
ADQ18283
UniProt:
E4RZP0
LinkDB
All DBs
Position
2929206..2933513
Genome browser
AA seq
1435 aa
AA seq
DB search
MSLKKNKKLNSDFNSFTISLASPESILEGSYGEVTQPETINYRTYKPEMGGLFCERIFGP
VKDWECHCGKYKRIRYKGIICDRCGVEVTEKKVRRERMGHIELVVPVAHIWYFKSLPNKI
GYLLGLSSKKLDQVIYYERYVVIQPGIKEEDGLSQMDFLTEEEYLDVLDKLPRENQMLPD
EDPQKFIAKMGAEALYMLLSRLKLDELSYELRHQAATDNSQQRKAEALKRLKVVESFRDA
QTRIENKPEWMIIRMVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLLEIK
APEVILRNEKRMLQEAVDSLFDNSRKVNAVRSDGNRALKSLSDMLKGKQGRFRQNLLGKR
VDYSGRSVIVVGPELKLHECGLPKDMAAELFKPFIIRKLIERGIVKTVKSAKKIVDRKDA
VIWDILENVLKGHPVLLNRAPTLHRLGIQAFQPKLVEGKAIQLHPLVCTAFNADFDGDQM
AVHVPLSQEAIMEASILMLSSHNILNPANGAPITVPSQDMVLGLYYVTKGKRSTPEEPIL
GEDKIFYSAEEVIIALNEGRLSKHAFIKVKAKVKDENGELVEKMIDTVAGRVLFNQFVPE
KVGYINELLTKKKLQGIIGKVFKEVSFARTAQFLDDIKELGFQSAFRGGLSIGLGDIMIP
EEKQGLIDNAREEVEEVQNNYMFGIITERERYNQIIDIWTRVNTRLRETLLRQLENDRQG
FNPVYMMMHSGARGSQEQIRQLGGMRGLMAKPQKNIAGSVGEIIENPILSNFKEGLDVLE
YFISTHGARKGLADTALKTADAGYLTRRLHDVAQDVVVNEEDCGTLRGINVSALKENDDV
IEPLSERILGRTSVHDIIDPITKELILAAGEEITEEIAERVDETSIETIEIRSPLTCETK
VGVCAKCYGRNLASGRMVDVGEAVGVIASQSIGEPGTQLTLRTFHTGGTAMNVSVEANLK
AKFPGKISFEDVRTVEYTNKEGEVNTIVIGRRGEIRIIDPATNQLLISNNIPYGSTLLVK
DGETVEKGAPLCNWDQFNAVIMTEFDGVVEYESIEEGVTYREEADEQTGFRDKVITDSKD
RAKNPAIIIKSASGETKDYNLPVSARLMVENGQEVKAGQILAKIPRAINMNRDITGGLPR
VTELFEARNPSNPAVVSEIDGVVSYGSIKRGNREIFVEAKDGTKMKYMVSLSKLILVQEG
DFIRAGEPLSDGAITPADILRIKGPTAVQEYLVNETQAVYRQQGVKISDKHIEVIVRQMM
QKVDVLDAGDTMFLEMQAVDKWLFREENDKIFDKKVVVDAGASENYKPGQIISTREFKDE
NSRLKREDKKQMTVRDAQPAVSQVILQGITTASLGTESFVSAASFQETTKVLSEAAVKGK
RDDLAGLKENVIVGHLIPAGTGRRKYQNIQVNSLEEIQAANAARAAEPRKREYVD
NT seq
4308 nt
NT seq
+upstream
nt +downstream
nt
atgtcactaaagaaaaataaaaagctgaatagcgattttaatagcttcaccatcagcttg
gcctctccagaatccattctggaaggctcttacggtgaagttactcagccggaaaccatc
aactatagaacctacaaaccagaaatgggaggtttgttctgtgaaaggattttcggtccg
gtgaaagactgggaatgtcactgcggtaagtacaagagaatccgttacaaaggaatcatt
tgcgaccgttgtggtgtagaagtaacagagaaaaaagttagacgtgaacgtatgggacac
attgaattagtggttcctgtagctcacatctggtacttcaaatcccttcctaacaaaatc
ggttatttgctaggcctttcttctaaaaaactagaccaagtaatatactacgaacgttac
gtggtaattcagcctggtattaaagaagaggacggtttaagccaaatggacttcttgact
gaagaagaatatttggacgttcttgacaaattgcctagagaaaaccaaatgttacctgat
gaagatcctcagaaattcatcgctaaaatgggtgctgaagcgctttatatgcttctttct
cgtttgaagctagatgaattgtcttacgaacttcgtcaccaggcagctacggataactct
caacaaagaaaagcggaagctttgaaacgtttgaaagtggtagaatccttcagagatgct
caaactcgtattgagaacaaacctgagtggatgattatccgtatggtacctgttattcca
ccggaacttcgtcctctagttcctttggatggtggacgtttcgctacttcggacttgaac
gacttgtaccgtagagtgatcatccgtaataaccgtctgaagagacttttagagatcaaa
gctcctgaagtgatcttgagaaacgagaaacgtatgcttcaagaagctgttgactcgtta
tttgataactctagaaaagtaaacgccgttagatcagatggtaaccgtgctttgaaatcc
ctttctgatatgttgaaaggtaaacaaggtcgtttccgtcagaacttattaggtaaaagg
gtggactactctggtcgttcggtaatcgtggtaggtccggaattgaaattgcacgagtgt
ggtcttcctaaagatatggccgctgagcttttcaaaccgtttatcatccgtaaactgatt
gaaagaggtatagttaagacggtgaaatctgcgaagaagatcgtagatagaaaagacgcg
gtgatctgggatatccttgagaatgtattgaaaggacaccctgtattgctaaaccgtgct
cctacactacaccgtttgggtatccaggctttccaacctaaactggtggaaggtaaagct
atccaattacaccctctagtgtgtaccgcgtttaacgccgactttgacggtgaccagatg
gctgttcacgtgcctttgagccaggaagctattatggaagcctctatcttgatgttgtct
tcgcataacattcttaacccggctaacggtgcacctattaccgtaccttctcaggacatg
gtacttggtctttattacgtaactaaaggaaaacgttctactcctgaagagccaatctta
ggagaagacaagatcttctatagtgcggaagaagtgatcatagccttgaatgaaggtcgt
ctttctaaacatgccttcatcaaagtgaaagcaaaagtgaaagatgagaacggagagttg
gtagaaaaaatgatcgatactgtagcaggtagggtattgtttaaccaattcgtccctgag
aaagtaggttatatcaatgaacttttgaccaagaaaaagcttcaaggtatcatcggtaag
gtatttaaggaagtatcctttgcccgtaccgcgcagttcctagatgatatcaaagaactt
ggattccagtcggccttccgtggtggtctttccataggtttaggtgacatcatgatccct
gaagaaaaacaaggtctgattgataatgctcgtgaagaagtagaagaggtacaaaacaac
tatatgtttggtatcatcactgaacgtgagcgttataaccaaatcatcgatatctggaca
agagttaacactcgtttgagagagacattgttgcgtcagttggaaaacgacagacaaggt
ttcaacccagtatatatgatgatgcactctggagcaaggggttctcaagagcagattcgt
cagttaggtggtatgaggggtctaatggccaagccacagaaaaacatcgcgggttctgtg
ggtgagatcatcgaaaacccaatcctttctaactttaaagaaggtttggatgttcttgag
tactttatctctactcacggtgctcgtaaaggtcttgcggatactgcccttaaaactgcc
gatgcgggttacttgactcgtcgtcttcatgatgtggctcaagacgttgtagtgaacgaa
gaagactgcggtactttaagaggtatcaacgtttcagcattgaaagaaaacgatgatgta
atcgaaccactttctgagcgtatccttggtagaacttctgttcatgacattatcgatcct
ataactaaggaattgattctggcagcaggagaggagattactgaagaaatcgctgagcgt
gtagatgaaacatcaattgaaaccatagagattcgttctccattgacttgtgaaactaaa
gtaggggtttgtgctaaatgttatggtagaaaccttgcttctggtagaatggttgacgta
ggtgaggctgttggtgtaattgcttctcaatctatcggtgagcctggtacacagttgaca
cttcgtacgttccacaccgggggtaccgcgatgaacgtttccgttgaagcgaacttgaaa
gcgaagttcccaggtaagatcagcttcgaagatgttagaacagtagaatatacaaacaaa
gagggtgaagttaatactatcgtgatcggtcgtcgtggagaaatccgtatcatcgatccg
gctactaaccaacttctaatctctaacaacataccttacggttcaactctgcttgtaaaa
gatggagagactgtggaaaaaggtgcaccattgtgtaactgggatcagtttaacgcggtg
atcatgacagaatttgatggggtagtagaatacgaatccattgaagaaggtgtaacttat
agagaggaggctgacgaacagaccggtttccgtgataaagtgatcactgactctaaggat
agagcgaaaaaccctgctatcatcattaagtcagcaagcggtgagacgaaagactataac
cttcctgtaagtgcccgtctaatggtggaaaacggacaagaagtgaaagccggtcaaatc
cttgctaagatcccaagagcgatcaacatgaaccgagatattacagggggtcttccaagg
gtaactgagctatttgaagcacgtaacccttctaaccctgcagtagtttctgagattgat
ggtgtagtttcttatggtagcatcaaacgtggtaacagagagatcttcgtagaagcaaaa
gacggtaccaagatgaaatacatggtatctctatctaagttgatcctggtacaagaaggt
gacttcatccgtgccggtgaaccactttctgacggtgctattacacctgcggatatcctt
agaattaagggaccaaccgccgttcaggagtacttggtaaatgaaactcaagcggtatat
cgtcaacaaggggtgaaaatctctgataagcacatcgaggtaatagtacgtcagatgatg
caaaaagtagacgtgttagacgcaggtgataccatgttccttgaaatgcaagcggtagat
aagtggttgttccgtgaagaaaacgataagatctttgataagaaagtagtagtagatgct
ggtgcatctgaaaactacaaacctggtcagatcatctctactcgtgaattcaaagacgag
aacagtcgcttgaaacgtgaagacaagaagcagatgaccgtgagagatgctcaaccagca
gtttctcaagttatccttcaaggtatcactacggcatccttaggtactgaatcattcgta
tctgctgcatccttccaggaaactactaaagtactttctgaagctgcagtgaaaggtaaa
cgcgatgatttagccggtctgaaagaaaacgtgatcgtaggtcacttgattcctgccggt
acaggacgtagaaagtaccaaaatattcaggttaattctctggaagagatacaggctgca
aacgctgcccgtgctgcagagcctcgaaaaagagagtatgtagattaa
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integrated database retrieval system
