Leishmania braziliensis: LBRM_21_0890
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Entry
LBRM_21_0890 CDS
T01113
Name
(RefSeq) conserved hypothetical protein
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
lbz
Leishmania braziliensis
Pathway
lbz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lbz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LBRM_21_0890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbz03019
]
LBRM_21_0890
Messenger RNA biogenesis [BR:
lbz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
LBRM_21_0890
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
LBRM_21_0890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
DUF3819
ARM_Cnot1
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
5415354
NCBI-ProteinID:
XP_001564795
UniProt:
A4HBS7
LinkDB
All DBs
Position
21:248943..255680
Genome browser
AA seq
2245 aa
AA seq
DB search
MLYDRVNDIGSSQGEAIRYILGAVSKNTVQTTLTTLEQFCFRSVELHRYTIKATCTALLA
ARSDERALLASRLVSEALGRPNGLTLVACALDGSSSTLTKESLTALMSSDLKLSLMKQMQ
MAMALVLGGNAMVKAAATDMLEDFNVPQAALKEDDGGVRAAALLSRQVGLAPANLDGQLA
NVCHTVALPKPKTEVKPRVSVAGVLRELGTGCVTTLADSRELLSIFPHSFTERDGAEVLA
FFASAGSAVNDSSTYASLMMASGKSSPKSMSGTTTLVNAMPLLDALCEGSSKGFNWDLVI
RMLDQLDGEPFRMKHISVIFDAYHRFQPDNEYPSVALFLGRWTNTMRQRSVLEYILRHPD
KVNRKPLTIDAPSELLPATKPPGVTAAEMDLWRSTTFMEAAVHVASRDKDFDNDVFRPAS
EKLPLLFLYSLFTGSFQGTVKHFMCIKHLLKAHCPSMDLVSQHIVPEMERRGRLSTVIGV
LSDLTEAAPERLVDALQVVFKCKSAAKRVLAESGSPRLVTAVAMCMEEAGEPSDKWLQRA
LEGKLHFRASSTENRFTVAMNIVEVAEMLQEKQLYVVSATAALNTLLASPLKEVLRSVMD
CAKALLASTDSLFPDDVENEALEFFKKMYAAGSTAAAIATVEILLKSTVPRDKQLYACIV
GIMFDETSAISFYPRKELQLFAELYGQMIAKDLLPPNQQQRAWGVLLPAVAKPANYAMEE
YGIIALEQVKPRLPDWPQYGRALRYVRDLDFRVPGIVAAINRGIKQEDTVARSGGAASAE
LGEGSPISPTSPKQPGSPNKALVAIDPAIVSAASPQSKKFTDTAAAKLHTLDIGTLVTNA
NVTAPPRVIQEQINFLIGNTDVRNLDSNATELSQLLRPEYYEYFADYLVVKRAALEPNYH
SMYIELIAKLHSKDMDRALRKATIGAVHRLLSSQKIGTDSSERILLRNLGSWLGSITLEK
NIPILQQDLHFKALLCQGIREGKLVPVVSFITRVLTSCAKSRFFCPPNPWTMAQLALLME
MYTLPHLRVTLRFELELLLKTLDQSMQDLAQYMRLHASNASTETRLRDVYDEINVNDSPD
FRVGEDESNVSAAAAVVPPAPATSSPTVPQLLRSSARPLQASAEPFQPKDKAQAPPSEVS
RVMQMLNKPIRPPISISMNWVFSTLSDPAFGNSAQRLTDHRLEIVAQLQAVVDEAVSYCM
QRSVAIAARTTEQLVLKDYARDPFPDDMLVAGDAMARSLASSLSYVMVRDELPLLLHRSM
TNLLERILAPYTPLEHKATIRDTLVARNLELCMRAVEYSVGEEAATATSRFLFDVVREKA
SAFAEQEPLPLPPDQIEAAELLRVMGETLVPSGRMPAPQREVYDDFYSCVPPVAVFTMVL
RSVEEAVSRYHSNENAAPLDFAQLDTATQKPGGPTDDAQAPVRQHLTHLMSLITEESSPY
FLSPMLNKLMSLAMSTERLTKLVNSSAKHTPAAAAAATNPDGTPKAAEDPAWQQEALRIS
SVLHQLYLRIVLRCRECCEETNRDEFTRLFLRHSHCYSFSKLTTDLIRIKILKCSEFDDA
LAKALTNGTSNYVTFAGDIITDVIIKEKLVASKDMRRTLMALDTIARTRAPRAAPAAPAQ
TLPSYVTEPPLSKIVPNQITKLLVPCDCVRPGEDEAFQKEVGQLMSDWIMVWSQKSHRYA
EKRIPSVEFVKTLQQRRMLDTTHLQTFLSLGVRYCVEYYANTMLAMERADGNITSETLVG
TRPGGPPGYRTPYTAKPFVMCDGFVELVMVLLQCCSLRNEASHDLRAETTLLRRVLDAVT
RVLTEHHNFVAKARPAPSWALAADEQFIPVFKQQPYVRLLSNLVYSLHRLEVSTTRAMST
EFTSAFHTFLRRVHPMEYPGFVFGWLEILSHRHVIPRFMNVQSMWPHYVDLLAGAMMFVK
FLIKGNRISPNGLVFYKSLLKLVLVLLHDYPRFLIAQHYPLCEAISLSCVQLLNTVLCSF
PPDKRLPEPFPHVDSNDPAMLQVLDTSVQEACIKATFTSFSVQPQLLANLEMMVTNDDAP
VRDGVLTDVLNVLTQPSAKRSLINAVVQHMAIVYLRTHDNRIPASFAKSNVLTCYRFLCS
RLNTKRRYYMLGACANQLRFPNIQTNFFANVMLNLFLPSPSVDTQTQTCVQEQITRVLAE
KTVIVQPHPWGVLNTFVELMREPKYKFWETSFIHYAPLDSMFTKLHHTVHTRLSKTGGAP
ALDGTRAESSTAVTTASGIGATLSA
NT seq
6738 nt
NT seq
+upstream
nt +downstream
nt
atgttgtatgatcgcgtgaacgacattggcagctcgcagggggaggcgattcgctacatc
ctcggtgctgtctccaagaacaccgtgcagacaacgctgacaacgctggagcagttctgc
ttccgctccgttgagcttcaccggtacaccatcaaggccacttgcacagccctgctggcc
gcgcgcagcgatgagcgggcattgttggcgtctcggctggttagcgaggcacttgggcgg
ccgaacgggctgaccctggttgcctgtgccctcgacggcagctcctcgaccctgacgaag
gagtccctcactgcgttgatgtcgagcgatctcaagctgtcacttatgaagcagatgcag
atggccatggcgctcgtgcttggcggaaatgcgatggtcaaggcagcagcgacggacatg
ctggaggacttcaacgtgccacaggcagcgctgaaggaggacgatggtggcgtgcgtgct
gcggcgctcttgtcgcgtcaggtagggcttgcccccgcaaacctcgacggtcagctggcg
aatgtgtgccacacggttgcgttgccgaagccgaagacggaggtgaagccgcgcgtcagc
gtggcgggcgtcctgcgcgaactgggaacggggtgtgtgacgacgctggcggactcgcgc
gagctgctcagcatttttccgcactccttcacagagcgcgacggagccgaggtgctcgcc
ttctttgcctccgcgggctcggccgtcaacgacagcagcacgtacgcgtcccttatgatg
gcgtcggggaagagctccccaaagagtatgagcggcacgacgacgcttgtgaatgcgatg
ccgcttctcgacgcgctgtgtgagggtagctcaaagggcttcaactgggaccttgtcatc
cgcatgcttgatcagttggacggcgagccgttccgcatgaagcacatctctgttatcttt
gacgcctaccaccgcttccagccagacaacgagtacccgtcggtggcactgtttctaggc
agatggacgaacacgatgcgccagcgcagcgtactggagtatatcctgcgccaccctgat
aaggttaatcgtaagcctctcacgatagacgccccgtcggagttgttaccggcgacgaaa
ccgcccggcgtgacggcagccgagatggacctatggcgctctacgacgttcatggaggct
gccgtgcacgtggcgagtcgcgacaaggacttcgacaacgacgtgttccgccccgcctcg
gagaagctgccgctgctcttcctgtacagcctcttcacggggagtttccagggcacggtt
aagcatttcatgtgcatcaagcacctgctcaaggctcattgcccatctatggacctagtg
tcgcagcacatcgtacccgagatggagaggcggggtcgcctgagcaccgttattggtgtg
ctttcggacctgacagaggctgcgccagagcgtcttgtggatgcgctgcaggtggtgttc
aagtgcaagtctgccgcgaagcgtgtgctcgctgagagcgggagccctcgcctcgtcact
gcagttgccatgtgcatggaggaggcgggcgagccgagcgacaagtggctgcagcgcgcg
ctggagggcaagctgcacttccgcgccagctccacggagaaccgcttcaccgtggccatg
aacatcgtcgaggtggctgagatgctccaggagaagcagctctacgtggtgagcgcgacg
gcggcgctcaacaccctgcttgcctccccgctaaaggaggtactgaggagcgtgatggac
tgcgccaaggcgctgctcgcctcgaccgattccctctttcctgacgacgtcgagaacgaa
gcgctggagtttttcaaaaagatgtacgccgctggcagcaccgcggctgccatcgccact
gtcgagatcctgctgaagagtaccgttccacgtgacaagcagctctacgcgtgcattgtg
gggatcatgttcgacgagacatctgccataagcttctacccgcgcaaggagctgcagttg
ttcgccgagttgtacggccagatgatcgcgaaggatctgctgccgccgaaccagcagcag
cgagcgtggggtgtcctcctaccagccgtcgcgaagcctgccaactatgcgatggaggag
tacggtattatcgcgcttgagcaagtgaaaccacgactgccggattggccgcagtacggt
cgcgctttgcgctacgtgcgagacttggatttccgcgttcccggcatcgttgccgccatc
aaccgtgggatcaagcaagaggacactgtggcgcgtagcggcggagcggcgtcggcggag
ctcggtgaaggaagcccaatctcgccaacgtctccgaagcagcctggctcgccgaacaaa
gcgctcgttgccatcgacccggccatcgtatcggcggcgtcgcctcagtcgaagaagttc
acggacacggcggcggcgaagctgcacacgctggacatcggtacgctcgtgacgaacgcg
aacgtgacggccccgccacgcgtgattcaagagcagatcaacttcctgattggtaacact
gacgtgcgtaatctggatagcaacgcgacggagctgtcacagctgctccggccagagtac
tacgagtactttgctgactatctggtggtgaaacgcgcagcgctggagcccaactaccac
tccatgtacattgagctgatcgcgaagcttcactcaaaggacatggatcgcgcactgcgc
aaggccactattggcgcagtgcatcgtctgctgagctcgcagaagattggcaccgactcg
agcgaacgtattctgctgcgcaacctcggctcctggctcggtagcatcacgctggagaag
aacattcctatcttgcaacaggacctgcactttaaggcgcttctctgccagggtattcgc
gagggaaagctggtcccggtcgtctcgttcattacgcgggtcctgacaagctgcgccaag
tcgcgcttcttctgtccgccaaacccgtggacgatggcgcagttggcgctgctgatggag
atgtacacgcttccccacctgcgagtgacactgcgcttcgagctggagctactgctgaag
acgctggatcagtcgatgcaggacttggcgcagtacatgcgacttcacgcctccaacgcc
tccactgagacgcgcctgcgcgacgtgtacgacgagatcaatgtcaatgatagccctgac
ttccgtgtcggcgaggatgaaagcaatgtgtctgcggcggccgctgtagtaccacccgcg
ccagctacatcctcgccgacggtgccgcagctgctgcgcagcagcgcccgcccgctgcaa
gccagcgccgagcctttccagccaaaggacaaggcgcaggccccgccgtccgaggtgagc
cgtgttatgcagatgttaaacaagccgattcgccctccgatcagtatctcgatgaactgg
gtgttttccacgcttagcgaccccgcctttggcaacagtgctcagcgtctcaccgatcat
cggctcgagattgttgcacagctgcaggccgtggttgacgaggccgtcagctattgcatg
cagcgcagtgtcgccattgccgcccgcacgacagagcagctggtgctgaaggactatgcg
cgcgacccgtttccggatgacatgctcgtcgctggtgatgccatggcccgctcactggcg
tctagcttgagctacgtgatggtgcgcgatgagctaccgctgctcctgcaccgttcaatg
acaaacctgctagagcgcattctggccccctacacaccactggagcacaaggcgacgatc
cgtgacacactagtggcgcgtaacctagagctgtgcatgcgtgcagtggagtacagtgtc
ggtgaggaggcggcgacggctacgagccgattcctattcgacgtcgtgcgcgagaaggcg
agcgcctttgcggagcaggaacctctgccgctgccgccagatcagatcgaggccgcggag
ctgctacgcgtcatgggcgagacgctcgtgccgtctggccggatgcccgccccgcagcgg
gaggtctacgatgacttttacagctgcgtgccacctgtggcggtgttcaccatggtgctg
cgcagcgtcgaggaggcagtgtctcggtaccactcgaacgagaatgccgcgccattggac
tttgcgcagcttgacacagccacccagaagccgggcgggccgactgacgacgcacaggcc
cccgtccgccagcacctgacccatctcatgagcctcatcacggaggagtcgagtccctac
ttccttagccctatgctgaacaagctcatgtccctcgccatgtcgacggagcggctgacc
aagctggtgaacagcagcgctaagcatacgccggccgctgctgctgctgccaccaaccct
gacggcaccccaaaagcggcggaggaccctgcgtggcagcaggaggccctgcgcatttcc
tcagtgttgcatcagctgtacctgcgcattgtgctgcggtgccgtgagtgttgtgaggag
acgaaccgtgacgagttcacgcggttgttcctgcgccacagccactgctactccttttcg
aagctgacgactgacctcattcgcatcaagatcctcaaatgcagcgagtttgatgacgcc
ctggcaaaggcgctgaccaatggcacgtccaactacgttacctttgcgggtgacatcatc
accgatgtcatcatcaaggagaagctcgtggcgtcgaaggatatgcgccgcacgctcatg
gccctcgatacgattgcgcggacgcgggcgccgcgcgccgcgccggcggcgccggcacag
acgcttccgtcgtacgtcacggagccgcctctgagcaagattgtgccgaatcagattacg
aagctcctcgttccgtgcgactgcgttcgccctggcgaggacgaggccttccagaaggag
gtggggcagctcatgagcgactggatcatggtgtggtcgcagaagagtcaccgctatgcc
gagaagcgcatcccatccgtcgagttcgtgaagacgctgcagcagcgccgcatgctggac
acgacccacctgcagacgttcctgagcctgggcgttcgttattgtgtggaatactacgcc
aacacaatgcttgcgatggagcgcgcagacggcaacattacaagtgagacgctggtgggg
acgcggcctggtgggccgccaggctaccgcaccccctacactgcaaagcccttcgtcatg
tgtgacgggtttgtggagctggttatggtgctgttgcaatgctgctctctgcgcaatgag
gcctcgcatgatttgcgggctgaaaccacgctactacgccgcgttctggacgccgtgacg
cgcgtgctgacggagcaccacaacttcgttgccaaggctcgccctgccccgtcgtgggca
cttgcagctgatgagcagttcatcccggtctttaaacagcagccgtacgtgcgcttgctt
agcaacctcgtctactcgcttcacaggctggaggtctcgacgacgcgcgccatgtcgact
gagttcacgagtgctttccacacgtttctacgccgcgtacaccccatggagtacccgggc
ttcgtgtttggctggctggagattttgtcgcaccgacacgtcatcccgcgcttcatgaat
gtgcagtcaatgtggccccactacgtcgacctcctcgctggtgccatgatgtttgtgaag
tttctgatcaaggggaaccgcatctccccgaacggcttggtcttctacaaatcgctgctg
aagctcgtactggtgctcctgcacgactacccgcggttcctgatcgcgcagcattaccca
ctgtgcgaggccatttcgctctcgtgcgtacagctgctcaacacggtgctgtgctccttc
ccacctgacaagcgcctgccagagccattcccccacgtggactctaacgatccggcgatg
ctgcaggtgctcgacacatccgttcaggaggcgtgcatcaaggccacttttacctccttc
agcgtgcagccgcagctcctcgcgaaccttgagatgatggtcacgaacgatgatgctccg
gtgcgcgacggcgttctgacggacgttctgaacgtcctgacgcagccctcagccaagcgg
agcctcatcaacgcggtagtgcagcacatggccattgtgtacctgcgcacgcacgacaac
cgaatccctgcaagctttgcgaagtcgaatgtgctcacctgctaccgttttttgtgcagc
cgactcaacacgaagcgccggtactacatgctcggcgcttgcgccaaccagctgcgcttc
ccgaacatccagacaaacttctttgcgaacgtgatgctgaacctgttcttgccgtcgccg
agcgtggacacgcagacccagacctgtgtgcaggagcagatcacgcgcgtgcttgccgag
aagacggtgattgtgcagccacatccgtggggcgtactcaacacgtttgtggagctaatg
cgcgaacctaagtacaagttctgggagacctccttcatccactatgcacccctcgattcc
atgttcacgaagctgcatcacacagtgcacacgcggttaagcaagactggcggtgcccct
gctctcgatggtacacgtgccgagtcgagcactgccgttacgactgcctctggcattggt
gcaacgctgtctgcgtag
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integrated database retrieval system
