Leishmania braziliensis: LBRM_30_2360
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Entry
LBRM_30_2360 CDS
T01113
Name
(RefSeq) pre-mRNA cleavage complex II Clp1-like protein
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
lbz
Leishmania braziliensis
Pathway
lbz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lbz00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
LBRM_30_2360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbz03019
]
LBRM_30_2360
Enzymes [BR:
lbz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
LBRM_30_2360
Messenger RNA biogenesis [BR:
lbz03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
LBRM_30_2360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
Motif
Other DBs
NCBI-GeneID:
5417761
NCBI-ProteinID:
XP_001566862
UniProt:
A4HIH2
LinkDB
All DBs
Position
30:complement(845036..846313)
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AA seq
425 aa
AA seq
DB search
MQSCKTHTSLHLSQEVVTIQWSAGQEGGAVLLLSGKVELFRSPLTRNLRYVFPAETCVVL
EAFGDAVLWIEGDATTVQTPMSGVLDEIHALLDTARVDAMLAIDERRKKALLSSEELRDS
WQGPRVLVVGENQWEREVVSRTLLNLAVRHGSPYGMCYVDVDVEMPMVGCPGTVSAAFVE
EPVTAPEDFNGMMPLTFFHGAASVTTATRKRYLDLCACAAQAATSLGFANSKFEAGGFLI
HSLSPSTEIQHDVLSDLLSIFSVTHVVITGADRELENFLYNAVLGRTVQFVRVPKLAGVL
PPTASGAEKRRRAQLARYFFGTTRTSLMPVRGVARISELVLLHSETFEPLSWRELPDLCL
AAVVWADTAASAAEANVAGFVALLEVGKQFVSFLAPSGGELPKPFLVVSPSLHLPRELVL
PLPVL
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atgcagtcgtgtaagacgcacacctcacttcatctcagccaagaggtcgttacgatacaa
tggagtgcagggcaagaaggcggtgctgttctgctcctcagcgggaaagtagagctgttt
cgcagtcccctgactcgaaacctacgctacgtctttccagcggagacgtgtgttgtgcta
gaggcatttggtgatgctgttctgtggatcgaaggagacgcgactaccgtgcagactccg
atgagcggcgtgctcgatgagatccacgcactgctggacacggcgcgcgtggatgcaatg
ttggccattgacgaacgccgcaagaaagccttgctgagctccgaggagctaagagactct
tggcagggccctcgtgttcttgttgtgggcgagaaccagtgggagcgtgaggtggtgtca
cggacgctcctcaatctcgcggttcgccacggtagcccgtacggcatgtgctacgtggac
gtggacgtggagatgccaatggtgggttgtccaggtaccgtctccgctgcctttgtagag
gagcctgtgacagcgccagaggacttcaatgggatgatgccgctgactttcttccacggc
gcggcctctgtcacaactgcgacgcggaagcgctacttggatctgtgcgcctgcgcggcg
caagcggccacctcactcgggttcgccaattctaaatttgaggctggcggcttcttgatc
cactcgttgtctccctccaccgagatccagcacgacgtgttgagtgacctcctctccatt
ttttcggtcacgcacgtcgtgatcaccggagcggacagggaactggaaaattttctttac
aacgctgtcttgggacgcacggtgcagtttgtgcgggtgccaaagctggcaggcgtgcta
ccccccaccgcgtccggtgcggagaagcgccggcgcgcgcagttagcacgctactttttt
ggcaccacgcgtacctctttgatgccagtgcgtggcgtggcacgaatatccgaattggtt
ctcctccactcggaaacattcgagccgctaagctggagagagctgccggacctgtgtctt
gctgccgtcgtctgggcagacacggcggcgtctgctgccgaagcaaacgtggcgggtttt
gtcgccctgctggaggttggcaagcaatttgtcagcttccttgccccatccggtggcgag
ctacccaagccatttttggtggtctcgccgtccctgcacctgccacgtgaactcgtgctg
cccttgccagtactgtag
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