Noviluteimonas caseinilytica: LYSCAS_05100
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Entry
LYSCAS_05100 CDS
T07541
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
lcas
Noviluteimonas caseinilytica
Pathway
lcas03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lcas00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LYSCAS_05100 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lcas03021
]
LYSCAS_05100 (rpoB)
03400 DNA repair and recombination proteins [BR:
lcas03400
]
LYSCAS_05100 (rpoB)
Enzymes [BR:
lcas01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LYSCAS_05100 (rpoB)
Transcription machinery [BR:
lcas03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LYSCAS_05100 (rpoB)
DNA repair and recombination proteins [BR:
lcas03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LYSCAS_05100 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
BCT91486
UniProt:
A0ABN6FPZ4
LinkDB
All DBs
Position
complement(513981..518159)
Genome browser
AA seq
1392 aa
AA seq
DB search
MTTASTTNYSFTEKKRIRKDFGKRRSILEVPFLLAIQVDSYREFLQEKGDPSKRDDKGLH
AALKSVFPITSYSGNAALEYVNYRLDTPMFDERECRNRGLSYGAPLRVTVRLVIYDRESS
VKAIKYVKEQEVYMGEIPLMTENGTFIVNGTERVIVSQLHRSPGVFFDHDRGKTHSSGKL
LYSARIIPYRGSWLDFEFDPKDALFTRIDRRRKLPVSVLLRALGYNNEEMLRAFFEINTF
HIEPEGVQLELVPERLRGETLEFDLADGDRVIVEAGKRITARHVKQLEQSGIAALAVPDA
YVVGRILAHDVVDAKTGELLAIANDEINEEHLAKFRKAGIDSVGTIWVNDLDRGPYLSNT
LRIDGTKTKLEALVEIYRMMRPGEPPTKDAAENLFHNLFFTFERYDVSAVGRMKFNRRIG
RKEVTGPSVLYDRKYFGDYKNGKDEEAQRLVSTMGDTSDILDVIRVLTEIRNGRGVVDDI
DHLGNRRVRSVGEMAENVFRVGLVRVERAVKERLSMAESEGLTPQELINAKPVAAAIKEF
FGSSQLSQFMDQNNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCTIETPE
GPNIGLINSLAVFARTNRYGFLETPYRKVVNGKVTDDVEFLSAIEENEYVIAQANAPTDD
KGTITSQFVACRYQGESLLKPPSEIHFMDVSPMQTVSVAAALVPFLEHDDANRALMGANM
QRQAVPTLKSQKPLVGTGIERAVARDSGVTVNARRGGLIEQIDAGRIVVKVNENEIVGET
DAGVDIYTLIKYTRSNQNTCINQTPLVNVGDRVARGDVLADGPSTDIGELALGQNMLVAF
MPWNGYNFEDSILLSERVVEEDRYTTIHIEELTCVARDTKLGPEEISADIPNVSEQALNR
LDESGVVYIGAEVRAGDIMVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGM
DGTVIDVQVFTRDGIEKDKRARQIEESEIRRVKKDFDDQFRILEGAIYARLRSQLLGKVA
NGGPNLKKGDVISAEYMDSLKKAEWFQLRMKDDDANDAIERASKQIDAHEKEFERRFADK
RGKITQGDDLAPGVLKMVKVFLAVKRRIQPGDKMAGRHGNKGVVSTIVPVEDMPYSADGQ
TVDIVLNPLGVPSRMNIGQILETHLGWAAKGLGQKIDRMLKAQAAIADLRTFLDQIYNHD
NEVNGQRVDLTQFTDAELLRLANNLTDGVPMATPVFDGAAETEIKRMLELADLPLSGQTM
LHDGRTGEAFERPVTIGYMHMLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFG
EMEVWALEAYGAAYTLQEMLTVKSDDVQGRNQMYKNIVDGEHEMVAGMPESFNVLVKEIR
SLAINMELEETR
NT seq
4179 nt
NT seq
+upstream
nt +downstream
nt
atgaccacagcgtccacgacgaattactcgttcaccgagaagaagcgcatccgcaaggat
ttcggcaagcgccgttcgatcctcgaggtgccgttcctgctcgcgatccaggtcgactcc
taccgcgagttcctccaggagaagggcgatccctccaagcgcgacgacaagggcctgcac
gccgccctgaagtcggtcttcccgatcaccagctacagcggcaacgccgcgcttgaatac
gtcaactaccggctcgacacgccgatgttcgacgagcgcgaatgccgcaaccgtggcctg
tcctacggcgcgccgctgcgcgtgaccgtgcgcctggtgatctacgaccgcgaatcgtcg
gtcaaggccatcaagtacgtgaaggagcaggaggtctacatgggcgagatcccgctcatg
accgagaacggcaccttcatcgtcaacggcaccgagcgcgtcatcgtctcgcagctgcat
cgttcgccgggcgtgttcttcgaccacgaccgtggcaagacgcacagctcgggcaagctg
ctgtactccgcgcgcatcattccctaccgcggctcgtggctcgacttcgagttcgacccc
aaggacgcgctgttcacccgcatcgaccgccgccgcaagctgccggtctccgtgctgctg
cgcgcgctcggctacaacaacgaagaaatgctccgcgcgttcttcgagatcaacacgttc
cacatcgaacccgaaggcgtgcagctggagttggtgcccgagcgcctgcgcggcgaaacg
ctggagttcgacctcgccgacggcgaccgcgtcatcgtcgaagccggcaagcgcatcacc
gcgcgccacgtcaagcagctcgagcagtccggcatcgccgcgctggccgtgccggacgcg
tacgtggtcggccgcatcctggcgcacgacgtcgtcgacgcgaagaccggcgaactgctg
gccatcgccaacgacgagatcaacgaagagcacctggcgaagttccgcaaggcgggcatc
gattcggtcggcaccatctgggtcaacgacctggaccgcggcccgtacctgtcgaacacc
ctgcgcatcgacggcaccaagaccaagctcgaagcgctggtcgagatctaccgcatgatg
cgtccgggcgagccgcccaccaaggacgccgcggaaaacctcttccacaacctgttcttc
accttcgagcgctacgacgtctccgccgtcggccgcatgaagttcaaccgccgcatcggt
cgcaaggaagtgacgggtccgtccgtcctctacgatcgcaagtacttcggcgactacaag
aacggcaaggacgaagaagcgcagcgcctcgtctcgacgatgggcgatacgtccgacatc
ctcgacgtgatccgcgtgctcaccgagatccgcaacggccgtggcgtagtggacgacatc
gaccacctgggcaaccgtcgcgtgcgttcggtcggcgaaatggccgagaacgtgttccgc
gtgggcctggtccgcgtcgagcgcgcggtcaaggaacgcctgtcgatggccgagtccgaa
ggcctgacgccgcaggaactgatcaacgccaagccggtggccgccgcgatcaaggagttc
ttcggctcctcgcagctctcgcagttcatggaccagaacaacccgctgtcggaagtgacg
cacaagcgtcgcgtctccgcgctgggcccgggtggcctgacgcgcgaacgcgcgggcttc
gaagtgcgcgacgtgcatcccacgcactacggtcgcgtgtgcacgatcgaaacgccggaa
ggcccgaacatcggcctgatcaactcgctcgccgtgttcgcgcgcaccaaccgctacggc
ttcctcgagacgccgtaccgcaaggtcgtcaacggcaaggtgaccgacgacgtcgagttc
ctctcggcgatcgaagagaacgagtacgtcatcgcgcaggccaacgcgccgaccgacgac
aagggcacgatcacctcgcagttcgtcgcgtgccgttaccagggtgagtcgctgctcaag
ccgccgagcgagatccacttcatggacgtctcgccgatgcagaccgtgtcggtcgcggcg
gccctcgtgccgttcctcgagcacgacgacgccaaccgcgcgctgatgggcgcgaacatg
cagcgccaggccgtgccgacgctgaagtcgcagaagccgctcgtgggcaccggcatcgag
cgggcggttgcgcgcgactcgggcgtgacggtgaacgcgcgccgcggtggcctgatcgag
cagatcgacgccggccgcatcgtggtgaaggtcaacgagaacgagatcgtcggcgagacc
gatgccggcgtcgacatctacacgctgatcaagtacacgcgctccaaccagaacacctgc
atcaaccagaccccgctcgtgaacgtgggcgaccgcgtggcccgcggcgacgtgctggcc
gacggtccctcgaccgacatcggcgagctcgcgctcggccagaacatgctggtcgcgttc
atgccgtggaacggctacaacttcgaagactccatcctgctctccgagcgcgtggtggaa
gaggatcgctacacgacgatccacatcgaagagctgacctgcgtcgcgcgcgacacgaag
ctgggcccggaagaaatctccgccgacatcccgaatgtctccgagcaggcgctcaaccgc
ctcgacgagtcgggcgtggtgtacatcggtgcggaagtccgcgccggcgacatcatggtc
ggcaaggtcacgccgaagggcgaatcgcagctgacgccggaagagaagctcctccgcgcg
atcttcggcgagaaggcttcggacgtgaaggacagctcgctccgcgttccgccgggcatg
gacggcaccgtcatcgacgtgcaggtcttcacccgcgacggcatcgagaaggacaagcgc
gcgcgccagatcgaggaatccgagatccgtcgcgtcaagaaggacttcgacgaccagttc
cgcatcctcgagggcgccatctacgcgcgcctgcgttcgcagctcctgggcaaggtcgcc
aacggcggccccaacctgaagaagggcgacgtgatcagcgcggaatacatggacagcctg
aagaaggccgagtggttccagctgcgcatgaaggacgatgacgccaacgacgccatcgaa
cgcgcgtcgaagcagatcgatgcgcacgagaaggaattcgagcgtcgcttcgccgacaag
cgcggcaagatcacccagggcgacgacctcgccccgggcgtgctcaagatggtgaaggtg
ttcctcgcggtgaagcgccgcatccagccgggcgacaagatggccggccgccacggcaac
aagggtgtggtgtcgacgatcgtcccggtcgaagacatgccgtactccgccgatggccag
accgtcgacatcgtgctcaacccgctgggcgtgccgagccgaatgaacatcggccagatc
ctcgagacgcacctgggctgggccgccaagggcctgggccagaagatcgaccgcatgctc
aaggcacaggcggcgatcgcggacctgcgcacgttcctggaccagatctacaaccacgac
aacgaagtcaacggccagcgcgtggatctcacgcagttcaccgacgcggaactcctgcgc
ctggcgaacaacctgaccgacggcgtgccgatggccacgccggtgttcgacggcgcggcc
gagaccgagatcaagcgcatgctcgaactcgccgacctgccgctgagcggccagacgatg
ctgcacgacggccgcacgggcgaagcgttcgagcgtccggtcaccatcggctacatgcac
atgctgaagctcaaccacctggtcgacgacaagatgcacgcgcgttcgaccggtccgtac
tcgctcgtcacccagcagccgctgggcggcaaggcgcagttcggcggccagcgcttcggc
gaaatggaagtctgggcgctggaagcctacggcgcggcctacaccctgcaggaaatgctg
acggtgaagtccgacgacgtgcagggccgcaaccagatgtacaagaacatcgtcgacggc
gaacacgagatggtcgcggggatgccggagtccttcaatgtgttggtgaaggagatccgc
tccctcgccatcaacatggaactcgaagaaacccgctaa
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