Lates calcarifer (barramundi perch): 108872705
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Entry
108872705 CDS
T04895
Name
(RefSeq) transient receptor potential cation channel subfamily V member 1
KO
K05222
transient receptor potential cation channel subfamily V member 1
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
108872705
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
lcf04040
]
108872705
Ion channels [BR:
lcf04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
108872705
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Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
Ion_trans
Ank_3
Ank_5
Ank_4
Motif
Other DBs
NCBI-GeneID:
108872705
NCBI-ProteinID:
XP_018516054
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Position
LG21:22203773..22212311
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AA seq
755 aa
AA seq
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MENGQTQDGAEPNKGQEEEGNSLDWLLRKDSPEIIPAPMDTNVLMSRQYSTSVDNIYSKA
FTREIVFEAASKGDTAQLNGLLDYLRVNDKRLTSPEFTDETNGKTALLKALLNLKDGKND
TIEYLLDVAEKTGDLENLINASYKDLYYKGQTALHVAIERRSFDHVKLLVQKGADVQAKA
NGKFFQRNAGLGFYFGELPLSLAACTNQPNIVSFLMENPYRRADLADRDSQGNTVLHTLV
VIADNTTENTDMVAGMYDQILTQHNKLEEKKKVDLEGIENNQGLTPLKLAAKLGKIGLFR
HILHREFIDEEMRPLSRKFTECVYGPVRSSLYDLSSIDTDENNSVLEIVVFGSDTPNCPE
MLQIEPLRSLLQDKWDRFASKLFLMNFLVYLIYLIIFTTVAFYRKEGQPPFPIEDAPVDY
FRCIGEIISVLGAVWFFYKAITIFKRNPPNFKTLYIDGFCDIVFFLQATLLLICAVLYCC
GQREYVGFLVLSLALAWINFLYYSRGSKEMGIYSVMMQRMILGDLLKFLWVYAVLLFGFS
AAIVTLIDDSAPVPKKRPNGTQGRGRSFGVETFTCKKPTYNDIRFTTLELFKFTIGMGDL
EFTDHVQYKEVFYILLILYIVLTYILLLNMLIALMGNTVERISKQSENIWNLQRAITILD
MERTLPRALRSRLHTGVSKMVCLRGEKDGYRRFFRVEEMNWRQWRSDLGVIQEEDPGNHM
MKQTHDQTPGNRWNLNPLLERIRVRRHRTQHSSIP
NT seq
2268 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatggacagacacaggatggagcagagccaaacaaaggccaagaagaggaaggg
aacagtctggattggctcctaagaaaagacagcccggagataattcctgcacctatggat
accaacgttttaatgtcaagacaatacagtaccagtgttgacaacatttacagtaaagca
ttcaccagggagatagtctttgaagcagcatccaagggggacacagctcaacttaatggc
ctgcttgactacctgcgagttaatgataagcgacttacgagcccagaattcacagatgaa
acgaatgggaagacagcactcctgaaggctttgctgaacctaaaagatggaaaaaatgac
accatagaatacctccttgatgtagcagagaaaacaggagatttagaaaatttaatcaat
gcgtcgtacaaagatctttactacaaaggtcagacagctctgcatgtcgccattgaaagg
aggagctttgaccatgtgaaactgctagtccagaaaggagcagatgtgcaagccaaagcc
aatgggaaattctttcagcgtaatgcaggactgggcttttattttggagaacttccactg
tcactggctgcctgcacgaaccagcccaatattgtgtccttcctcatggaaaacccttac
agaagagctgacttggctgacagagactctcagggaaacactgtcttgcacaccttggtg
gtcatagcagacaacacaacagagaacacagatatggttgcagggatgtatgaccagatc
ctcactcagcacaacaaacttgaggaaaaaaaaaaagtagatctggaaggaattgaaaat
aatcaggggctgactcctctgaagttagcagccaagcttggaaagattgggctgttcagg
cacattttgcaccgggaattcatagatgaggagatgaggccgttgtccaggaagttcaca
gaatgtgtctacggacctgtccgttcctcactttatgacttgagttccattgacacagac
gaaaacaactctgtgttggagatagtcgtctttgggagtgacactccgaattgtcctgag
atgctccagatcgagcctctacgcagtctcctccaggataaatgggacaggttcgcctcc
aaattattcttgatgaatttcttggtgtatctgatatacctgatcatcttcaccactgtg
gccttctacagaaaggaaggacagccaccgtttcctatcgaagatgccccagtcgactac
ttccgctgcattggtgagatcatcagtgtccttggagcagtgtggtttttctataaagcg
ataactattttcaagaggaaccctccaaacttcaagactctatacattgatggattctgt
gacattgtatttttcctgcaggccacactccttctaatctgtgcagttttgtactgctgt
ggacagagagagtatgttggattcctcgtactgtcactggctcttgcctggatcaacttc
ctttactactcaagaggctctaaagaaatggggatctacagtgtcatgatgcagagaatg
atcctgggtgacctgttaaagtttttatgggtctatgctgtcttgctttttggattttct
gcagctattgttactctcatagatgactctgctccagttcccaaaaaacgtcccaatggc
acacagggacgtggaaggagctttggtgtcgagacatttacgtgcaagaaaccaacttac
aatgacattagatttacaacactggaattgttcaagttcactattggaatgggagatctg
gagtttactgaccatgttcaatataaggaagttttctacatcctgctcatcctgtacata
gttctcacttacatcctgctgctcaatatgctcatcgccctgatgggcaacacagtcgaa
agaatctccaaacaaagtgaaaacatctggaacctgcagagggcgattacaattctggac
atggagaggactctgccgagggctctgaggagcaggctgcacacaggagtgtcgaagatg
gtgtgtttgagaggcgagaaggatgggtatcggagatttttcagggtggaggaaatgaac
tggagacaatggaggtcagatcttggtgtgatccaggaggaagacccagggaatcacatg
atgaagcagacccatgaccagacccctggaaatcgatggaacctgaatccactattggag
aggattcgtgtcagacgtcaccgaacacagcattccagtattccctaa
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