Lates calcarifer (barramundi perch): 108873242
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Entry
108873242 CDS
T04895
Name
(RefSeq) integrin alpha-IIb isoform X1
KO
K06476
integrin alpha 2B
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04510
Focal adhesion
lcf04512
ECM-receptor interaction
lcf04810
Regulation of actin cytoskeleton
lcf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108873242
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
108873242
09142 Cell motility
04820 Cytoskeleton in muscle cells
108873242
04810 Regulation of actin cytoskeleton
108873242
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lcf01009
]
108873242
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lcf04147
]
108873242
04515 Cell adhesion molecules [BR:
lcf04515
]
108873242
04090 CD molecules [BR:
lcf04090
]
108873242
Protein phosphatases and associated proteins [BR:
lcf01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
108873242
Exosome [BR:
lcf04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
108873242
Cell adhesion molecules [BR:
lcf04515
]
Integrins
Integrin alpha subunits
108873242
CD molecules [BR:
lcf04090
]
Proteins
108873242
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Integrin_A_Ig_2
Integrin_A_Ig_3
Integrin_A_Ig_1
FG-GAP
FG-GAP_3
Integrin_alpha
Motif
Other DBs
NCBI-GeneID:
108873242
NCBI-ProteinID:
XP_018516917
LinkDB
All DBs
Position
Unknown
AA seq
1032 aa
AA seq
DB search
MCFRQTGMMCVFRCVCVLLCVCVCVCLNLLDEAVMFSGPTGSLFGFSVDFHTISNKSFVV
IGAPKANTSQSGVTEGGSVFLCPWSPGGGSCDIIKFDLEGDEDYNSSGLFFQSFKSQQWF
GASVRSVSSSHLLACAPLFHWNVQMGEAESGKTPVGNCLLLDHRTGSSTSFSPCRGIMME
ADYTRMKNRNDQRYCEVGFSADITKEGRLVLGAPGSFYFQGQVFTVGVSDIINSEQSNTP
ISYVGGISQSDERGSYDIYRGYSVTTGQLTGDSTPDYVVGVPNDRNTAGTVKIYDGRSIG
SLRVSHIFQGVQVASYFGHSVAVADINSDGLDDVLVGAPLFMDRVMEQLQERGQVVVYLQ
RKYTSFTSRPDQSLIGSSLYGRFGSALAVLGDLDMDGYQDVAVGAPWSGDSGQGQVFIYL
GNSNGLSATPFQVIDSPLPCSRTAFGFTLRGRADIDGNGYPDLLVGAWAADRAFVYRSQA
VIRSRVSLTLLPDFLNPDVKLCHQGNTPVSCFVIQMCVYVSGHRIPQETALGVELQLDQM
KQLMARRTLLLSTNQPQDTMKLVVQREVGKTCMNQTAYLRSEEEVQDKLSPIFITVNISL
LNTTQHALLHGQTHTAAQTRIILDCGNDNICVPDLKLRAEPVSDSVLVGEDQSVLLAVLA
ENEGEGAYETELVVRVPEHTHFQSSQGVNRLVCVQRKENQTIVVTCDLGNPMTQGHTVQT
GLLFSVGHLEEVESHIGFTLRIRSKNSVNSSSNQVTVRIQVRAEATLEIRGGSSPPEVVL
PLPDWQPAMHPGSLEVGPLVEHVYELRNYGPSAVNARLTVDFPSSWRHHFLLYIFSNATE
ESLSCWTLNASQIDPFKLVENSSDVSVVSPSVQQEETNSHRQTVHVNCSSNETGCVRFVC
DVMALGRGFSAVVRISARLWTRTLTQTPYLNYELVSSASYNVINASSKVQLLLLPSGHTQ
TQVSVLWRPPDGEKEVPIGYIVLSIISGLLLLGLFCFIFWKLGFFQRTRPPTDDDEGEDE
EQQLAEESHMTE
NT seq
3099 nt
NT seq
+upstream
nt +downstream
nt
atgtgtttcaggcagacaggtatgatgtgtgtgttcaggtgtgtgtgtgtgttgctgtgt
gtgtgtgtgtgtgtgtgtctgaacctgttggatgaagccgtgatgttcagcggtccgaca
ggaagtctgtttggattctccgttgactttcacaccatcagtaacaagtcctttgttgtg
attggagctcccaaagccaacaccagccaatcaggagtgacggagggagggagtgtgttc
ctctgcccctggtcacctggaggcggatcctgcgacatcatcaaatttgacctggaaggt
gatgaggactacaacagctctggtctgttctttcagtcctttaagagtcagcagtggttt
ggagcttcagttcgatcagtcagcagctcacacctactggcatgcgctccgctctttcat
tggaacgttcagatgggggaggcagagtcagggaaaacacctgtggggaactgcctccta
ttagaccacaggacaggaagctccacctccttctccccctgcagaggaatcatgatggag
gccgactacacccgcatgaaaaacagaaacgaccagcgctactgtgaggtcggcttcagc
gctgacatcacaaaggagggtcgactggtgctcggagctccaggaagcttctatttccag
ggtcaggtctttactgtgggcgtgagtgacatcatcaacagtgagcagagcaacactccc
atctcgtatgtggggggcatcagccaatcagacgagagaggaagttatgacatctaccgt
ggttactctgtgaccactggtcagctgactggagactccacaccagattatgtggtcggt
gttcccaatgacagaaacacagcaggaacagtgaagatctacgacggcaggagtatcgga
tcactgagggtttcccacatcttccagggagttcaggtggcatcatacttcggacacagt
gtggctgtggccgacatcaacagcgacggtttggatgatgtgttggttggagctcctctc
ttcatggacagggtgatggagcagcttcaggagagaggacaggtggttgtgtacctgcag
agaaaatacacctccttcacctctcgacctgaccaatcactgatcggctcctccttgtac
gggcggtttggctccgcccttgctgtgctgggagacctagacatggatggttaccaagat
gtggctgtcggggctccctggtcaggtgacagtgggcagggccaggtgttcatctacctg
ggcaacagtaacggtctctcagccacgccctttcaggtgattgacagcccgttgccttgc
agcaggacagcgtttggctttactctgaggggaagggctgacattgatgggaatggatat
ccagacctgctggttggagcatgggctgccgaccgagcttttgtctacaggtcccaggca
gtgatccggtccagggtttctctcactctgcttccggacttcctgaatccagatgtcaaa
ctgtgtcaccaaggaaacacacctgtgtcttgttttgttatccagatgtgcgtctatgtg
tctggtcacagaatcccacaggagacagcactgggggtggagctacaactggaccagatg
aaacagctaatggcacgacggaccttgctgctgtcgaccaatcagccacaggatacaatg
aagctggtggttcagagggaggtgggcaagacctgtatgaatcagactgcctacctgagg
tctgaagaggaggttcaggataagttgagtccgatcttcatcacggtcaacatcagcctc
ctcaacactacccaacatgctttgcttcatggacagacacacactgctgcacagaccagg
atcattctggactgtggaaatgacaacatctgtgtccctgacctgaagctgagagctgaa
cctgtgtctgacagtgtgttggtcggtgaggatcagtcggtgttgttggcggtgttggcg
gaaaacgagggtgagggggcatacgagaccgagctggtggtccgagtccctgaacacaca
cacttccagagcagccagggtgtgaacagactggtgtgtgttcagaggaaggagaatcag
accatcgtcgtgacctgtgacctcggaaaccccatgacacaaggacacacagtgcagaca
ggtcttctgttcagtgttggtcatctggaggaggtggagagtcacatcggcttcaccctc
aggatcaggagtaagaactcggtgaactccagcagtaaccaggtcacagtgaggattcag
gtcagagctgaggcgactttggagatcagaggaggctcctccccccctgaggtcgtcctg
cccctccctgactggcagcctgcaatgcatcctgggagcttagaagtgggtccactggtg
gagcatgtttacgagttgaggaactatggtccgagtgcggtgaacgctcggctgaccgtg
gacttcccctcctcctggcgacatcacttcctgctctacatcttctccaacgccacagag
gaatcactaagctgctggaccctgaatgcatcacagatagaccccttcaagttggttgag
aactcctcagatgtgtctgtagtttctccgtctgtccagcaggaggagacaaactctcac
agacaaactgttcatgtgaactgcagcagcaatgagacaggttgtgtcaggtttgtttgt
gatgtcatggcgttggggcggggcttcagtgctgtcgtcaggatctcagcccggctgtgg
acacgcacactcacacagactccgtacctgaactatgagcttgtttcctccgcctcctat
aatgtcatcaacgcatcatcaaaagttcaactgctgctgctgccaagtggacacacacag
actcaggtcagtgtgttgtggcgtcctcctgatggagagaaagaagttcctattggctac
attgtcctgtcaatcatctctggactactcctccttggcctgttctgtttcatcttctgg
aagctgggtttctttcagcgcactcgtcctcctactgatgatgatgagggtgaagatgaa
gagcagcagctggctgaggagagtcacatgactgaataa
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integrated database retrieval system
