Lates calcarifer (barramundi perch): 108874562
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Entry
108874562 CDS
T04895
Name
(RefSeq) protocadherin-10a isoform X2
KO
K16499
protocadherin delta 2
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
lcf04515
]
108874562
Cell adhesion molecules [BR:
lcf04515
]
Cadherins
Protocadherins
108874562
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
DUF4621
DUF4832
Motif
Other DBs
NCBI-GeneID:
108874562
NCBI-ProteinID:
XP_018518589
UniProt:
A0A4W6EHA0
LinkDB
All DBs
Position
LG5:24932824..24952882
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AA seq
1038 aa
AA seq
DB search
MILLIFLLSILDGAVSQLHYSVPEEQEPGSVVGNIAEDLGLDITKLSARRFQTVPSSRTP
YLEVNLENGALVVKEKIDREEICKQTIPCLLHLEVFLENPLELFRVEIEVMDINDNPPSF
PETDISVEISESAIPGTRFPVENAFDPDVGTNALSTYAITNNNYFYLDVQTQSDGNKFAE
LVLEKPLDREQQAVHRYVLTAVDGGIPQRTGTALLVVKVLDSNDNAPTFDQSVYTVNLRE
NSPVGTLVIQLNATDVDEGQNGEIVYSFSSHNTPRIKDLFNIDARTGRIEVAGEVDYEES
NTHQIYVQAKDLGANAVPAHCKVLVKLMDVNDNTPEIGFSTVTESVSEQDAPGTVIALFS
VSDRDSGENGQMSCEILGDVPFKLKSSFKNYYTIVTDGPLDRESTDSYTITVVAKDKGQP
SLATSKSIKVHVSDENDNAPRFTQAVYDVYVTENNVPGAFIHAVSALDPDIGQNALITYS
ILECDIQGMSVDTYVSINQDTGYLYALRSFDYEQLKEFSFMVQAKDSGAAELFSNATVNV
IIVDQNDNAPTVIAPIGKNGTAKEHLPRSAEPGYLVTRIVAMDADDGENARLSYSILRGN
EMEMFRMDWRTGELRTARRISPKRDPQGYYDLLIEVRDHGQPPLSSSASVSVILVDSVVE
GRSGDRGSASKAKETSLDLTLILIIALGSVSFIFLLAMIVLAVRCQKDKTLNLYTCLLAG
DCCLCCGSCCSRQARGRKQKKLSKSDIMLVQSTNVTSGVGPVGQVPVEESGVGGVGGGFG
SHHHQNQNSYCYQVCLTPESAKTDLMFLKPCSPSRSTDTDHTNPCGAIVTGYSDQQPDII
SNGSILSNETKHQRAELSYLVDRPRRVNSSAFQEADIVSSKDSGHGDSEQGDSDHDATNR
GHSAGADLFSNCTEECKALGHSDRCWMPSFVPSDGRQGPDYRSNLHVPGMDATLPDTEVP
SSVNLSDQLTMTSSTTSSNDRSFSTFGKDGQRSQSHHSLHHHLHQQQQQYSSSTLERKEY
DRGTLPYKPTFLSRKRIC
NT seq
3117 nt
NT seq
+upstream
nt +downstream
nt
atgattttgttaatattcctgctctccatcctggatggagctgtctctcagctacattac
tccgtgccagaggagcaggagcctggctctgtggttgggaatatcgcagaggatttgggg
ctggacattaccaaactttccgctcgccgctttcagacggtgcctagttcacggacacct
tatctggaggtgaacttagaaaacggtgcgctcgtagtgaaggagaaaatcgaccgggaa
gaaatctgtaagcagaccatcccgtgcctactgcacctggaggtgtttctggagaacccg
ctggagctctttcgcgtggagatagaggtgatggatatcaacgacaatccacccagcttt
cccgagacggacatttccgtggagatatcggagagcgccatccccgggacccgtttcccg
gtggagaacgccttcgaccccgacgtgggcacaaacgcgctcagcacatatgccataacg
aataataactatttttaccttgacgtgcagacgcagagcgacgggaacaagtttgcggag
ctggtgctggagaagccgctggacagggagcagcaggcggtgcaccgctatgtgctgacg
gctgtggatgggggcatcccgcagcggaccgggacggctctcctggtcgtgaaagttctg
gactctaacgataacgcgcccacgtttgaccagtccgtgtacactgttaacctgcgggaa
aactcccccgtgggaactctggtcatccagctcaacgccacggatgtcgacgagggacaa
aacggggaaatagtttattctttcagcagccacaataccccgcggataaaggacttattc
aatattgatgccagaacaggtaggatcgaggtggcgggggaggtggactatgaagagagc
aacacgcaccagatttacgtccaggctaaagatctgggggctaatgcggtccctgcgcac
tgcaaagtgctggtcaaactcatggacgtgaacgacaacacaccagagatcggtttcagc
actgtgaccgagtccgtgagcgagcaggacgcccccggcaccgtgatcgcactttttagc
gtctcggaccgggactccggcgaaaacggacaaatgagctgcgagatattaggagacgtc
cccttcaagctcaagtcgtcttttaaaaactactacaccatcgtgacggacgggccgctg
gacagagagagcactgattcgtacaccatcaccgtggtggccaaagacaagggtcagccg
tcgctcgccaccagcaagtccattaaagtgcacgtctccgatgagaacgacaacgcgccc
cgttttacacaggctgtttatgatgtgtatgtaactgagaataacgtgcccggagctttc
attcacgccgtgagcgctttggaccctgatataggacaaaacgctcttatcacctactcc
atattggagtgcgacatacagggcatgtctgtggacacgtatgtgtccatcaaccaggac
accggctacctttacgcgctgcgctcttttgattatgagcagctgaaggagtttagcttc
atggtccaggctaaggactcaggtgcagctgaactcttctccaatgccactgtaaatgtg
atcatagttgaccaaaatgacaacgctcccactgtaatagcccccatcggtaagaacggc
acagccaaagagcacttgccgcgctctgcggagcccggctacctggtgacgcgcattgtg
gccatggatgcggacgatggcgagaacgcacggctgtcctacagcatcctgcgtggcaac
gagatggagatgttccgcatggactggaggacaggggaactgcggacagcccgcaggatc
tctcccaagcgggacccgcagggctactacgacctgctgatcgaagtgagggaccacggg
caaccccctctctcttcctccgccagcgtgagcgtaatactagtggacagtgtggtcgaa
ggccgcagtggggatcgcggctcggcctccaaggcgaaggagacctcccttgacctcact
ctcatcctcatcatcgccctgggctccgtctccttcatcttcctcctggccatgatcgtg
ctggccgtgcgctgccaaaaggacaaaaccctcaacctgtacacgtgtctgctggccggt
gactgctgcctgtgctgcggctcgtgctgcagcaggcaagctcgcggccggaaacagaag
aagctgagcaaatccgacatcatgttagttcagagcactaacgtgacttcgggggtgggc
cccgtggggcaggtgcccgtggaggagtctggtgtgggcggcgtgggaggggggtttggc
tcccaccatcaccagaaccagaactcctactgctaccaggtgtgtctgacgccggagtcc
gccaaaacggatctgatgttcctcaaaccgtgcagcccctctcgcagcactgacacggat
cacaccaacccttgcggcgccatagtcacgggttacagtgaccaacaaccggacatcata
tccaacggcagtattctctctaatgagacaaaacaccaacgagcagaactcagctatctg
gtggacagacccagacgtgtcaacagttcggcattccaagaagcagacattgtcagctcc
aaagacagtggtcatggcgacagcgaacagggcgacagcgaccatgatgccaccaaccgg
ggtcattcggctggtgctgacctgttctccaactgcacagaggagtgcaaggccctaggc
cactctgaccgctgctggatgccgtcatttgtgccgtccgacgggcgccaggggccggac
taccgcagcaacctgcacgtgcccggcatggacgccacactgcctgacactgaggtaccc
tcctccgtcaacctgtctgaccagctcaccatgacctcgtccaccacctcgtccaacgat
aggtcattctccacctttggcaaggacggtcaaaggtcacagtcacaccacagccttcac
catcacctccatcagcaacagcagcagtacagctccagcacgctagagaggaaagaatat
gatagggggaccctaccgtacaaacccacctttctctcccgcaaaaggatttgctag
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