Lates calcarifer (barramundi perch): 108877507
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Entry
108877507 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: integrin alpha-5-like
KO
K06484
integrin alpha 5
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03266
Virion - Herpesvirus
lcf04145
Phagosome
lcf04510
Focal adhesion
lcf04512
ECM-receptor interaction
lcf04810
Regulation of actin cytoskeleton
lcf04820
Cytoskeleton in muscle cells
lcf05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03266 Virion - Herpesvirus
108877507
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108877507
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
108877507
09144 Cellular community - eukaryotes
04510 Focal adhesion
108877507
09142 Cell motility
04820 Cytoskeleton in muscle cells
108877507
04810 Regulation of actin cytoskeleton
108877507
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
108877507
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lcf04147
]
108877507
04515 Cell adhesion molecules [BR:
lcf04515
]
108877507
04090 CD molecules [BR:
lcf04090
]
108877507
Exosome [BR:
lcf04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
108877507
Cell adhesion molecules [BR:
lcf04515
]
Integrins
Integrin alpha subunits
108877507
CD molecules [BR:
lcf04090
]
Proteins
108877507
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Integrin_A_Ig_3
Integrin_A_Ig_2
Integrin_A_Ig_1
FG-GAP
FG-GAP_3
ITGAX-like_Ig_3
Integrin_alpha
Motif
Other DBs
NCBI-GeneID:
108877507
NCBI-ProteinID:
XP_018523099
LinkDB
All DBs
Position
LG12:10352423..10389797
Genome browser
AA seq
1053 aa
AA seq
DB search
MGTVPGLSPSRLWGKCCHHAVLVVVMVVFVQFCAAFNLDTETRVVFTGPRGSYFGYSVEF
FSNSSSISILIGAPKANTSQPDITEGGAVYLCPWSQTNCSIVNFDKQGDRYFYVNNVNTR
VEFKSHQWFGATVRSHGNSILACAPRYYWRTEHDTPFADVTGTCYLSVDSLKTFVEYAPC
RTERHGPAGQGYCQGGFSADFTKDGRVVLGGPGSFYWQGQLISATTEEIVKAYYPSYFLL
SVAGQIQTQQVQESYDDSYLGYSVAGGEFSGDDEEDFITGVPKGLMLYGLVSILNGRNLK
SLLNLTGEQMGSYFGYAVAATDVNNDGLDDLVVGAPMFMRRGSSGRLEELGKVYVYLQKG
PLLLEASQSHLLGQQAFSRFGTSLAPLGDLNQDGFNDMAIGCPYGGEDQQGLVLIYNGHA
GGLLDMPTQTLSGQWASNSFPASFGFAMRGNRDLDQNGYPDLIVGAFGVDKAVLYRARPI
VSASASLTVQPTMFNQEEKTCRLNTSNETTDVSCVSITFCLLANGKHLPSHLGFVVEVQL
DSMKQNQKESTRRTLFLDSQQPSLVKTFNLANGERLCHDTMIYLRGEEEFRDKLSPIYVS
LNFSLDPHSAVPQHGLRPILNYQTEQLIEQKAQIQLDCGDDNICVPDLKLAVNGDRTEVY
LGDENSLSLTFNARNEGEGGAYETELYVVLPPEADYSGIARNNVSLTQLTCSYETENQTR
YLVCDLGNPMKPGTSLWAGLRFTVPRLKDTHSTVQFELQIRSKNANNSESEVVLYELEVA
AMADVILQGVSRPDKVIFPPPNWTVHQSLREEQDVGPELQHVYELVNNGPSVVSQSTLEM
RCPLRGHGHELLYPVEVVTEGPLTCSSKTTVNALKLKLQPPAAQGPTSLKSNTEHHIQRR
EVTKDPLAEQGNLTCSTVECWQLQCHVGLLERGGSVILTVRSRLWAETFIERPYKQYVLE
CSVGYKVDRMPYSILPKFKPSGSKKVVTAVIWNKPDTLFPVPVWIIILAVLAGLLLLSLL
IYLLYKMGFFKRSDPYGTTMEKAQLKPQASSEA
NT seq
3162 nt
NT seq
+upstream
nt +downstream
nt
atgggcaccgttcctggactttcaccttcccggttatggggaaaatgttgtcatcacgct
gtgctggttgtagtcatggtggtttttgtccagttttgcgcagcgtttaacttggacact
gagacacgcgtcgttttcactggtccacggggaagttatttcggctactctgtggagttc
ttcagtaactcatccagtatcagcattttgatcggtgctccgaaagccaacaccagtcaa
cccgacatcactgagggaggagctgtgtacttgtgcccctggagccaaactaactgcagc
attgtcaactttgacaagcaaggtgatcgatatttttatgttaataatgtgaacactcgg
gttgagttcaaatcccatcagtggtttggagctactgtgcgttcccatggcaacagcatc
ctggcttgcgctcccaggtattactggaggaccgaacatgacacaccctttgctgatgtt
acaggaacctgctacctctctgtagacagcctcaaaacctttgtggagtatgccccttgt
cgaacagaaagacatggacctgccggacagggctattgtcaggggggatttagtgctgac
ttcactaaggatgggagggttgtgcttggaggaccaggcagcttttactggcaaggtcag
ctgatctcagccaccacggaggagattgttaaggcctactacccctcttattttctcctg
tcagttgccgggcagatacagacccaacaggtgcaggagagctatgatgacagttacctg
ggttactctgtggctggtggtgagttcagtggggatgatgaggaagatttcatcacagga
gttccaaaaggactcatgctgtatggtttagtgtccatattaaatggaaggaatctgaag
tctctgctcaacttgacaggagagcagatggggtcctactttggctacgcagtggcagca
actgacgtcaacaacgatggtctggatgacctggtggtgggagctccaatgttcatgcgt
cgagggtccagtgggcgtctagaagaactgggcaaggtatacgtgtacctccagaagggc
cctttgctgctggaggcaagccagtcccacctcctcggtcagcaggctttcagtcggttt
ggcacctcactggctccgctgggtgatctcaaccaagatggattcaatgacatggccatt
ggctgtccctatggaggtgaagaccagcagggattggttctcatttataacggtcatgct
ggaggacttctggacatgcccactcagactctctctggtcaatgggcttccaactctttc
ccagccagttttggctttgctatgcgaggcaaccgagatctggatcaaaatggctaccca
gatctgattgtcggtgcttttggggtagataaagcagtgctatacagggctcggccaata
gtgagcgccagcgcatctctcacagtacagccgaccatgttcaaccaagaggagaagact
tgtaggctgaacactagcaatgaaaccactgatgtgtcttgtgtcagcatcactttctgc
ttgctggctaatgggaagcaccttccctctcatctaggctttgtggtggaggttcagtta
gacagtatgaagcaaaaccagaaagaatccacgaggaggaccctgttcctggacagtcag
cagccaagtctggtgaagacattcaatcttgccaacggagagcgcttgtgccatgacacc
atgatatatctgcggggtgaagaggagtttcgggataaactctctcccatttacgtcagt
ctcaacttcagtctggatcctcattccgcagtgccccagcatggcctcagaccaatcctg
aattatcagacagaacagctgatagagcagaaggcccagattcaactcgactgtggagat
gacaacatctgtgtccctgacctcaaactggctgttaatggtgacagaactgaggtgtac
ttgggtgatgaaaactccttgagtctgacgttcaatgccaggaatgagggagagggaggg
gcatatgagactgagctgtatgtggtacttcctccagaggcagactacagtggaatagca
cggaacaatgtgagcttgacccagctgacatgcagctacgagacagaaaatcagacccgg
tatctcgtgtgtgatctggggaaccccatgaagcctggtaccagtttatgggctggcctt
cggttcactgtgcccagactaaaggatactcacagcactgtacagtttgagctccaaata
cgaagtaaaaatgcaaataactctgagagtgaggtagtgttgtatgagttggaggtggct
gcgatggctgatgtcattctgcaaggtgtttctcgaccagacaaagtcatctttccccct
cccaactggactgttcatcagagtctgagggaagagcaggacgtcggccccgagcttcag
cacgtctatgagttggtaaataatggtcccagtgtggtcagccagtcaacattagagatg
agatgtcctctgaggggacacggccatgagctgctctatccagtggaggtggtcactgag
gggccgctgacctgctcctccaaaacaactgttaatgcactgaaactcaagctccagcct
ccagcagcacagggtcccacgtcactgaaatccaacactgagcaccacatccagagaagg
gaggtgaccaaagatcctctagctgaacaaggaaacctgacctgctctacagtggagtgc
tggcagctgcagtgtcatgttgggctgctggagagaggaggcagtgttattctgactgta
cgttccagactctgggctgaaaccttcattgagaggccctataagcagtatgttctggag
tgctctgttgggtacaaagtggacaggatgccttattctatcctccctaaattcaagcca
tctggatccaaaaaggtggtgacagctgtgatctggaacaagccggacactttgttccct
gttccagtgtggatcatcatcctggctgttctagctgggctgctgttactctccctgctc
atatatctactgtacaagatgggcttctttaaaaggtcagatccatacggtacgaccatg
gagaaggcccagctcaaaccccaggcgtcctctgaagcttag
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integrated database retrieval system
