Lates calcarifer (barramundi perch): 108881245
Help
Entry
108881245 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: beta-hexosaminidase subunit beta
KO
K12373
hexosaminidase [EC:
3.2.1.52
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf00511
Other glycan degradation
lcf00513
Various types of N-glycan biosynthesis
lcf00520
Amino sugar and nucleotide sugar metabolism
lcf00531
Glycosaminoglycan degradation
lcf00600
Sphingolipid metabolism
lcf00603
Glycosphingolipid biosynthesis - globo and isoglobo series
lcf00604
Glycosphingolipid biosynthesis - ganglio series
lcf01100
Metabolic pathways
lcf04142
Lysosome
Module
lcf_M00079
Keratan sulfate degradation
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00520 Amino sugar and nucleotide sugar metabolism
108881245
09103 Lipid metabolism
00600 Sphingolipid metabolism
108881245
09107 Glycan biosynthesis and metabolism
00513 Various types of N-glycan biosynthesis
108881245
00531 Glycosaminoglycan degradation
108881245
00603 Glycosphingolipid biosynthesis - globo and isoglobo series
108881245
00604 Glycosphingolipid biosynthesis - ganglio series
108881245
00511 Other glycan degradation
108881245
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
108881245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03110 Chaperones and folding catalysts [BR:
lcf03110
]
108881245
Enzymes [BR:
lcf01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.52 beta-N-acetylhexosaminidase
108881245
Chaperones and folding catalysts [BR:
lcf03110
]
Intramolecular chaperones
Others
108881245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_20
Glycohydro_20b2
Glyco_hydro_20b
Motif
Other DBs
NCBI-GeneID:
108881245
NCBI-ProteinID:
XP_018528668
LinkDB
All DBs
Position
LG9:complement(16905571..16911822)
Genome browser
AA seq
548 aa
AA seq
DB search
MSTTLKFTVLLLALGFCRGLLDNYIDEEETEAPDAQASKFGSLWPLPQKVQISEVSFKLT
SSSFKIVDAKESSAGPSCSLLQDAYRRYYEYMFGSTKKLGLSKSRRTGPSELTELQVWIT
SPDSECDDYPSVTSDESYELSVDLPFAVLKAPKVWGALHGLETFSQLLYEDEYGAKSVNA
TTISDFPRFAHRGILLDSSRHFLPIKVILANLETMAMNKFNVFHWHIVDDQSFPYLSRTF
PQLSQQGAYHPYTHVYTPADVKMVIEFARLRGIRVIPEFDTPGHTQSWGKGQKDLLTPCY
SGSKPSGTFGPINPILNTTYDFMNQFFKEISTVFPDAYVHLGGDEVDFTCWRSNPDIQQF
MNSTGFKQDYSKLESFYIQRLLDIVTTTNKGYMIWQEVFDNGVKLKPDTVVHVWIGGGSN
EEMEKVTAAGYTTILSAPWYLDLISYAQDWQKYYKVEPLNFNGTEEQKKLVIGGEACLWG
EYVDATNLTPRLWPRASAVAERLWSAKDVTDINDAFNRLSMHRCRMVERGIPAEPLFSSY
CPREYKGI
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
atgagcactaccttgaagtttactgtactgttgctggccctgggcttttgccgggggctt
ctggacaactacatcgatgaggaggagactgaggctcctgacgctcaggcgtcaaaattc
ggctccctgtggcctctgccgcagaaagtgcagatctcagaggtctcattcaagttaacc
agctccagcttcaaaatagttgacgccaaagagtcatccgccggcccgagctgcagcctc
ctgcaggatgcctacaggcggtattatgaatacatgtttggcagcactaaaaagctgggg
ctgagcaaaagcaggcgaacaggcccctctgagctgacagagctgcaggtgtggatcaca
tcacctgactctgaatgtgacgattatcccagtgtaacttctgacgagtcatatgaactg
tcagtggatctgccatttgctgtcctgaaggcaccaaaggtctggggagccctgcatggt
ttggagactttcagccagctgctgtatgaagatgaatatggagctaaaagcgtcaatgcc
actacaattagcgacttccccagatttgcacacagaggcatcttactggacagctctcgg
catttcctgcccattaaagtcatcttggctaatctggaaacaatggcgatgaacaaattc
aatgtcttccactggcacattgtcgatgatcaatccttcccttacctgagccgaacgttc
ccacagctgagccagcagggagcttaccacccgtacacacatgtgtatacacctgctgat
gtgaagatggtgattgagtttgcccgtctgagaggcattcgcgtcatcccagagttcgac
actccaggacacacacagtcatggggcaaaggccaaaaagatctgctcacaccctgttat
tctggctccaaaccctctggcacttttggacctataaaccccattctgaacactacatac
gacttcatgaaccagttcttcaaggagatcagcactgtgtttcctgatgcctacgttcac
ctgggaggtgatgaggtggacttcacctgctggaggtccaatccagacattcagcagttc
atgaacagcacaggtttcaaacaagactacagcaaactggaatcattctacatccaaaga
ctcttggatattgtcaccactaccaacaagggctacatgatctggcaggaggtctttgac
aatggtgttaagctaaagccagacacagtagtgcatgtgtggatcggcggcgggtctaat
gaggagatggaaaaggtgacggcagcaggatacaccaccatcctctccgccccatggtac
ctagatttaattagctacgcacaggactggcagaagtactacaaggttgagccactcaac
ttcaacggaactgaagagcagaagaaacttgtgattggtggagaagcctgtttgtgggga
gagtatgtggatgccaccaacctgacacccagactctggcctcgtgccagtgctgtggca
gagcgcctgtggagcgccaaagacgtgacggacatcaacgatgccttcaacagactctcc
atgcaccgctgtcgtatggtcgagcgcgggatccctgctgagcctttgttttccagctac
tgtccccgtgagtacaagggtatatga
DBGET
integrated database retrieval system
